linnarsson-lab / ipynb-lamanno2016Links
Notebook and examples related to La Manno and Gyllborg et al. 2016
☆16Updated 8 years ago
Alternatives and similar repositories for ipynb-lamanno2016
Users that are interested in ipynb-lamanno2016 are comparing it to the libraries listed below
Sorting:
- SPATA Package for spatial gene expression analysis☆21Updated 3 years ago
- R package for specialised analysis of single cell data☆38Updated 2 years ago
- Overview of the scripts used to analyse the brainimmuneatlas data☆19Updated 4 years ago
- Ordering gene-expression and functional events in single-cell experiments☆22Updated last year
- VoxHunt: Resolving human brain organoid heterogeneity through single-cell genomic comparison to spatial brain maps☆47Updated last year
- Repository for the building, sharing and editing of scRNAseq pipelines for the Lung Cell Atlas☆37Updated 4 years ago
- ☆16Updated 3 years ago
- Algorithms for single-cell analysis☆29Updated 4 years ago
- ☆28Updated 3 years ago
- An R wrapper for too-many-cells, for clustering single cells and analyzing cell clade relationships with colorful visualizations.☆26Updated 5 years ago
- ☆49Updated 7 years ago
- A R package for integrated scRNA-seq data analysis using the RPCI algorithm☆44Updated last year
- Bi-order integration (in silico multi-omics data) of single cell RNA sequencing, single cell ATAC sequencing, spacial transcriptomics and…☆36Updated last year
- Calculation of Reference/Cluster Similarity Spectrum (RSS/CSS)☆33Updated last year
- CellRank's reproducibility repository.☆15Updated 3 years ago
- Reproducibility code for the manuscript: 'Inferring and perturbing cell fate regulomes in human cerebral organoids☆28Updated 2 years ago
- Independent Component Analysis decipher functional modules for better cell clustering and annotation☆16Updated 3 years ago
- ☆58Updated last year
- A novel computational method for inferring cell-type-specific signaling networks using single-cell transcriptomics data for better charac…☆43Updated 11 months ago
- Quasilinear data representations for single-cell omics data analysis☆42Updated 2 years ago
- Algorithm for the inference of cell types and lineage trees from single-cell RNA-seq data. This is a novel R package of the RaceID3 and S…☆43Updated 8 months ago
- identifying disease critical cell types and programs from single cell RNAseq☆57Updated 3 years ago
- Methods for clustering and analyzing high-throughput single cell immune cell repertoires (RepSeq)☆15Updated last month
- ☆52Updated 2 years ago
- Predicted cell-cell interactions of the aging mouse brain☆20Updated 5 years ago
- Single-cell Orientation Tracing☆21Updated 3 years ago
- R package for detection of cell-cell interaction using Non-negative Tensor Decomposition☆34Updated last month
- Data and code for the paper "Developmental diversification of cortical inhibitory interneurons"☆24Updated 6 years ago
- An R implementation of the SINCERA pipeline for single cell RNA-seq profiling analysis☆28Updated 4 years ago
- A study to compare methods for clustering of scRNA-seq data☆43Updated last year