linnarsson-lab / ipynb-lamanno2016
Notebook and examples related to La Manno and Gyllborg et al. 2016
☆16Updated 7 years ago
Related projects ⓘ
Alternatives and complementary repositories for ipynb-lamanno2016
- A toolset for analysis and visualisation of Spatial Transcriptomics datasets.☆18Updated 3 years ago
- R package for specialised analysis of single cell data☆36Updated 2 years ago
- Calculation of Reference/Cluster Similarity Spectrum (RSS/CSS)☆29Updated 8 months ago
- ☆47Updated 6 years ago
- Overview of the scripts used to analyse the brainimmuneatlas data☆19Updated 4 years ago
- Analysis pipeline for the adolescent mouse nervous system project☆24Updated 6 years ago
- Single-cell Orientation Tracing☆21Updated 2 years ago
- Data and code for the paper "Developmental diversification of cortical inhibitory interneurons"☆24Updated 5 years ago
- Inferring CNV data from single cell ATAC seq☆22Updated 9 months ago
- SPATA Package for spatial gene expression analysis☆21Updated 2 years ago
- VoxHunt: Resolving human brain organoid heterogeneity through single-cell genomic comparison to spatial brain maps☆41Updated 8 months ago
- ☆19Updated 5 years ago
- Scripts related to VISp and ALM scRNA-seq and FISH analysis for Tasic, et al., 2018.☆24Updated 6 years ago
- Reproducibility code for the manuscript: 'Inferring and perturbing cell fate regulomes in human cerebral organoids☆25Updated last year
- Repository for the building, sharing and editing of scRNAseq pipelines for the Lung Cell Atlas☆31Updated 3 years ago
- Code to go along with https://doi.org/10.1016/j.cell.2022.09.010☆20Updated 2 years ago
- ☆28Updated 8 months ago
- ☆44Updated 3 months ago
- Capybara: A computational tool to measure cell identity and fate transitions☆56Updated 2 years ago
- SIB/Scilifelab autumn school in single cell omics 2019.☆21Updated 5 years ago
- Associated code to the manuscript "Characterization of immune cell populations in the tumor microenvironment of colorectal cancer using h…☆39Updated this week
- Clone of the Bioconductor repository for the scran package.☆40Updated 2 months ago
- Individual level Differential Expression Analysis for Single cells☆22Updated last year
- Code used to analyze single cell RNA and ATAC sequencing in developing human brain☆31Updated 2 years ago
- Bi-order integration (in silico multi-omics data) of single cell RNA sequencing, single cell ATAC sequencing, spacial transcriptomics and…☆34Updated last year
- Predicted cell-cell interactions of the aging mouse brain☆19Updated 5 years ago
- CellRank's reproducibility repository.☆14Updated 2 years ago
- 10x snRNA-seq study on 5 postmortem human brain regions across the reward circuitry: NAc, AMY, sACC, DLPFC, and HPC☆21Updated 2 years ago
- Ordering gene-expression and functional events in single-cell experiments☆18Updated 8 months ago
- ☆24Updated 2 months ago