mdozmorov / RNA-seqLinks
RNA-seq analysis scripts
☆15Updated 2 months ago
Alternatives and similar repositories for RNA-seq
Users that are interested in RNA-seq are comparing it to the libraries listed below
Sorting:
- Readme☆10Updated 5 years ago
- ☆17Updated last year
- Snakemake workflow for Illumina RNA-sequencing experiments - extract population genomic signals from RNA-Seq data☆18Updated 6 months ago
- a set of NGS pipelines☆24Updated 2 weeks ago
- ☆19Updated last year
- ☆23Updated 4 years ago
- ☆18Updated 4 years ago
- lncRNA-screen☆25Updated 8 years ago
- Predicting TF sequence-specificity similarity with weighted alignments☆13Updated 6 years ago
- ☆12Updated 4 years ago
- ☆23Updated 9 months ago
- ORF Quantification pipeline for Alternative Splicing☆16Updated 4 years ago
- Documentation for vcfR☆11Updated 4 months ago
- ☆14Updated 2 years ago
- A collection of scripts to run GWAS, regional, gene-oriented, or per-variant analyses.☆18Updated 11 months ago
- ☆22Updated 2 months ago
- an R/Shiny application for interactive creation of non-circular plots of whole genomes☆45Updated 4 months ago
- Method for Identifying Novel Transcripts and Isoforms using Equivalence classes, in cancer and rare disease.☆36Updated last year
- SpliceWiz is an R package for exploring differential alternative splicing events in splice-aware alignment BAM files.☆21Updated 6 months ago
- Geared towards life scientists wanting to be able to understand and use basic statistical and machine learning methods☆16Updated 3 months ago
- ☆19Updated 2 years ago
- Filter and prioritize fusion calls☆20Updated last year
- Pipelines for NGS data preprocessing by the Bock lab and friends☆22Updated 3 years ago
- A set of tools to annotate VCF files with expression and readcount data☆29Updated 7 months ago
- RNAseq analysis with Hisat2, stringtie, and ballgown☆17Updated 6 years ago
- A repository containing various scripts useful for performing quality control on data from genome-wide association studies and visualizin…☆20Updated 7 years ago
- TEProf2 Pipeline used to find promoters and predict protein sequences from RNA-sequencing data☆27Updated 2 years ago
- Abismal is a mapper of FASTQ bisulfite-converted short reads (between 50 and 1000 bases) to a FASTA reference genome.☆19Updated last week
- Transcriptome-wide network☆16Updated 6 years ago
- Bioinformatics Pipeline☆12Updated 3 years ago