Alternatives and similar repositories for gwas_eqtl:

Users that are interested in gwas_eqtl are comparing it to the libraries listed below

• yuanzhongshang / GIFT
  ☆18Updated 4 months ago
• FinucaneLab / fine-mapping-inf
  Fine-mapping with infinitesimal effects
  ☆15Updated last year
• bvoightlab / ColocQuiaL
  Pipeline for multiplex computing of statistical colocalization via COLOC between GWAS and QTL data.
  ☆18Updated 2 years ago
• ipdgc / Manhattan-Plotter
  This is a repository to help make plots similar to Figure 2 in https://www.biorxiv.org/content/10.1101/388165v3
  ☆12Updated 6 years ago
• natsuhiko / PHM
  Pairwise Hierarchical Model
  ☆17Updated 3 years ago
• bhattacharya-a-bt / MOSTWAS
  Multi-Omic Strategies for TWAS
  ☆13Updated last year
• mglev1n / locusplotr
  Create Regional Association Plots
  ☆11Updated 7 months ago
• SUwonglab / rss-net
  RSS-NET: Regression with Summary Statistics exploiting Network Topology
  ☆18Updated 6 months ago
• dongwei1220 / R-Data-Visualization
  Data visualization with R
  ☆11Updated 4 years ago
• molgenis / 1M-cells
  This is the repository which contains the code that was used to generate the results and figures of the “Single-cell RNA-sequencing revea…
  ☆11Updated 9 months ago
• crazyhottommy / single-cell-DNAseq-notes
  ☆15Updated 2 years ago
• cotsapaslab / jlim
  ☆10Updated 2 years ago
• roman-tremmel / ggfastman
  Fast manhattenplots using ggplot2
  ☆9Updated last year
• statgen / pheweb-rg-pipeline
  Genetic correlation calculation pipeline via summary statistics for PheWeb
  ☆13Updated 6 years ago
• jokergoo / BioCartaImage
  BioCarta pathway images
  ☆11Updated last year
• liusihan / population-compare-pipeline
  Analysis pipelines for QTL discovery and GWAS signals interpretation
  ☆9Updated 6 months ago
• karltayeb / cafeh
  ☆13Updated 2 years ago
• boxiangliu / locuscompare
  LocusCompare is an interactive visualization tool for comparing two genetic association datasets.
  ☆21Updated last year
• immunogenomics / IMPACT
  Code for creating cell-type-specific regulatory element annotation files
  ☆18Updated 9 months ago
• cemalley / scRNASeq-bulkRNASeq
  single cell and bulk RNASeq analysis scripts
  ☆12Updated 3 years ago
• EMO-Consortium / GeneticCorrelation
  ☆11Updated last year
• dcalderon / rolypoly
  Method for identifying trait-relevant gene annotations from GWAS summary statistics.
  ☆17Updated 2 years ago
• guokai8 / richR
  Function Enrichment analysis and Network construction
  ☆11Updated last month
• RitchieLab / Gene-level-statistical-colocalization
  ☆15Updated 3 years ago
• szcf-weiya / MTWAS
  R package for "Multi-tissue Transcriptome-Wide Association Studies (MTWAS)"
  ☆14Updated 8 months ago
• hakyimlab / PredictDB_Pipeline_GTEx_v7
  PredictDB Pipeline for GTEx v7 data
  ☆17Updated 2 years ago
• Jeremy37 / AD_finemap
  Code supporting analyses in paper on fine-mapping AD loci
  ☆15Updated 3 years ago
• PejLab / Pantry
  Pan-transcriptomic phenotyping
  ☆15Updated 3 weeks ago
• gusevlab / stratAS
  🌓 Allele specific analyses across cell states and conditions
  ☆10Updated 2 years ago
• swvanderlaan / GWASToolKit
  A collection of scripts to run GWAS, regional, gene-oriented, or per-variant analyses.
  ☆18Updated 4 months ago