Alternatives and similar repositories for gwas_eqtl

Users that are interested in gwas_eqtl are comparing it to the libraries listed below

• FinucaneLab / fine-mapping-inf
  Fine-mapping with infinitesimal effects
  ☆17Updated 3 months ago
• bvoightlab / ColocQuiaL
  Pipeline for multiplex computing of statistical colocalization via COLOC between GWAS and QTL data.
  ☆19Updated last week
• derekmichaelwright / gwaspr
  An R package for plotting GWAS results from the GAPIT package
  ☆12Updated last month
• ipdgc / Manhattan-Plotter
  This is a repository to help make plots similar to Figure 2 in https://www.biorxiv.org/content/10.1101/388165v3
  ☆13Updated 6 years ago
• lcpilling / gwasRtools
  R package for processing of GWAS output
  ☆16Updated last year
• yuanzhongshang / GIFT
  ☆20Updated 9 months ago
• hakyimlab / PredictDB_Pipeline_GTEx_v7
  PredictDB Pipeline for GTEx v7 data
  ☆17Updated 2 years ago
• liusihan / population-compare-pipeline
  Analysis pipelines for QTL discovery and GWAS signals interpretation
  ☆11Updated 11 months ago
• dongwei1220 / R-Data-Visualization
  Data visualization with R
  ☆12Updated 4 years ago
• statgen / pheweb-rg-pipeline
  Genetic correlation calculation pipeline via summary statistics for PheWeb
  ☆13Updated 6 years ago
• iaaaka / evo-devo
  ☆12Updated 4 years ago
• GP2code / GP2-Multiancestry-metaGWAS
  ☆11Updated 2 years ago
• hakyimlab / phenomexcan
  PhenomeXcan: mapping the genome to the phenome through the transcriptome
  ☆11Updated 5 years ago
• yiminghu / post-GWAS-pipeline
  A comprehensive pipeline for post-GWAS analysis leveraging diverse types of omics data
  ☆29Updated 3 years ago
• boxiangliu / locuscompare
  LocusCompare is an interactive visualization tool for comparing two genetic association datasets.
  ☆21Updated 2 years ago
• RajLabMSSM / ggLocusZoom
  Create LocusZoom-style plots in R.
  ☆22Updated 2 years ago
• gandallab / devBrain_xQTL
  ☆10Updated 3 months ago
• cemalley / scRNASeq-bulkRNASeq
  single cell and bulk RNASeq analysis scripts
  ☆12Updated 3 years ago
• RebeccaFine / benchmarker
  Benchmarking gene and variant prioritization algorithms for GWAS data
  ☆15Updated 5 years ago
• molgenis / 1M-cells
  This is the repository which contains the code that was used to generate the results and figures of the “Single-cell RNA-sequencing revea…
  ☆11Updated last year
• SUwonglab / rss-net
  RSS-NET: Regression with Summary Statistics exploiting Network Topology
  ☆19Updated 4 months ago
• bernatgel / regioneR
  An R/Bioconfuctor package for association analysis of genomic regions based on permutation tests
  ☆13Updated 3 months ago
• jrs95 / geni.plots
  GENI plots to visualise results from genome-wide association studies
  ☆30Updated 10 months ago
• natsuhiko / PHM
  Pairwise Hierarchical Model
  ☆19Updated 3 years ago
• jinghuazhao / INF
  SCALLOP-INF analysis
  ☆20Updated 11 months ago
• immunogenomics / IMPACT
  Code for creating cell-type-specific regulatory element annotation files
  ☆18Updated last year
• EMO-Consortium / GeneticCorrelation
  ☆11Updated last year
• gusevlab / stratAS
  🌓 Allele specific analyses across cell states and conditions
  ☆10Updated 2 years ago
• smgogarten / GWASTools
  Classes for storing very large GWAS data sets and annotation, and functions for GWAS data cleaning and analysis
  ☆18Updated 5 months ago
• huwenboshi / s-ldxr
  Stratified squared trans-ethnic genetic correlation
  ☆14Updated 3 years ago