vpc-ccg / freddieLinks
Freddie: Annotation-independent detection and discovery of transcriptomic alternative splicing isoforms using long-read sequencing
☆16Updated 2 years ago
Alternatives and similar repositories for freddie
Users that are interested in freddie are comparing it to the libraries listed below
Sorting:
- ☆36Updated 2 years ago
- Identify and annotate TE-mediated insertions in long-read sequence data☆42Updated last month
- An R package for estimating poly(A)-tail lengths in Oxford Nanopore RNA and DNA reads.☆54Updated 9 months ago
- Summarise and plot data from long-read ONT (direct RNA/cDNA) BAM files☆14Updated last year
- Long-read splice alignment with high accuracy☆64Updated 10 months ago
- EM based transcript abundance from nanopore reads mapped to a transcriptome with minimap2☆62Updated 9 months ago
- ☆12Updated 2 years ago
- Long-read Isoform Quantification and Analysis☆38Updated 4 months ago
- A pipeline to detect chimeric transcripts derived from genes and transposable elements.☆30Updated 2 weeks ago
- ☆23Updated 7 months ago
- ☆19Updated 2 years ago
- ☆34Updated last year
- Pipeline to identify isoforms from full-length cDNA sequencing data☆25Updated 3 months ago
- GENE-SWitCH project RNA-Seq analysis pipeline☆28Updated 5 months ago
- Error correction of ONT transcript reads☆58Updated last year
- IsoTools is a python module for Long Read Transcriptome Sequencing (LRTS) analysis.☆27Updated last year
- fusion transcript detection using long reads, leveraging ctat-minimap2 and FusionInspector☆22Updated this week
- SingleCell Nanopore sequencing data analysis☆60Updated 2 months ago
- Scoring GT/AG sites for improving spliced alignment☆45Updated 3 weeks ago
- LongcallR is a SNP caller for single molecule long-read RNA-seq data☆63Updated this week
- DNA multiple sequence aligner, official version from Penn State's Miller Lab☆35Updated 6 years ago
- Simple library/pipeline to generate and handle Hi-C data.☆38Updated 8 months ago
- ☆62Updated last year
- ENCODE long read RNA-seq pipeline☆50Updated 2 years ago
- Hi-C Interaction Frequency Inference (HIFI): High-resolution estimation of DNA-DNA interaction frequency from Hi-C data☆24Updated 2 years ago
- SAMStat displays various properties of next-generation sequencing reads stored in SAM/BAM format.☆24Updated 2 years ago
- The Flexible Demultiplexer☆34Updated this week
- Long read to rMATS☆32Updated 2 years ago
- Allo: a multi-mapped read rescue strategy for gene regulatory analyses☆24Updated 11 months ago
- Immuological gene typing and annotation for genome assembly☆37Updated 4 months ago