vpc-ccg / freddie
Freddie: Annotation-independent detection and discovery of transcriptomic alternative splicing isoforms using long-read sequencing
☆17Updated last year
Related projects ⓘ
Alternatives and complementary repositories for freddie
- ☆24Updated last month
- Summarise and plot data from long-read ONT (direct RNA/cDNA) BAM files☆13Updated 7 months ago
- Identify and annotate TE-mediated insertions in long-read sequence data☆40Updated last year
- toolkit to process gtf files☆16Updated 2 years ago
- A Nextflow workflow to generate lift over files for any pair of genomes☆54Updated this week
- Code for phasing SVs with SNPs☆52Updated 4 years ago
- ☆15Updated 2 years ago
- A gene fusion caller for long-read transcriptome sequencing data.☆16Updated 6 months ago
- LongcallR is a small variant caller for single molecule long-read RNA-seq data☆41Updated last month
- Error correction of ONT transcript reads☆58Updated last year
- python plotly Circos from VCF☆31Updated 5 months ago
- Transposable Elements MOvement detection using LOng reads☆19Updated this week
- Pipeline to identify isoforms from full-length cDNA sequencing data☆22Updated 6 months ago
- GENE-SWitCH project RNA-Seq analysis pipeline☆23Updated 6 months ago
- EM based transcript abundance from nanopore reads mapped to a transcriptome with minimap2☆56Updated last month
- Reconstruction of focal amplifications with long reads☆13Updated this week
- DNA methylation analysis downstream to Nanopolish for Oxford Nanopore DNA sequencing datasets☆27Updated last year
- An m6A-aware basecalling model to detect m6A modifications at single nucleotide resolution in individual reads (Cruciani, Delgado-Tejedo…☆15Updated 5 months ago
- FamDB file format library and utilities☆17Updated last week
- DNA methylation analysis downstream to Nanopolish for Oxford Nanopore DNA sequencing datasets☆34Updated 3 years ago
- Long-read Isoform Quantification and Analysis☆39Updated 3 months ago
- The Flexible Demultiplexer☆26Updated 2 months ago
- Transcript assembly and quantification for RNA-Seq☆8Updated 4 years ago
- An R package for estimating poly(A)-tail lengths in Oxford Nanopore RNA and DNA reads.☆53Updated last month
- Set of tools to manipulate and visualize modified base bam files☆49Updated 2 years ago
- ☆33Updated last year
- Working space for the GIAB TR benchmarking project☆20Updated 3 weeks ago
- ☆21Updated 2 weeks ago
- catalog for long-read sequencing tools☆32Updated last year
- ☆26Updated 5 months ago