T cell Receptor and B cell Receptor assembly from single cell RNA sequencing data
☆10Aug 27, 2017Updated 9 years ago
Alternatives and similar repositories for VDJPuzzle
Users that are interested in VDJPuzzle are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆17Jun 24, 2021Updated 5 years ago
- predicting peptide and TCR interaction☆19Jan 27, 2021Updated 5 years ago
- Classifier to determine CD8+ T-cell receptor characteristics underlying peptide recognition.☆10Jan 21, 2020Updated 6 years ago
- ☆10Jan 24, 2021Updated 5 years ago
- Fast, efficient tool for analysis of T cell receptor repertoires (OLD VERSION)☆11Jun 20, 2017Updated 9 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Predicting T Cell Receptor Specificity with Deep Learning☆10Jul 17, 2019Updated 7 years ago
- A set of real-world RepSeq datasets used for testing the VDJtools software☆10Jul 8, 2016Updated 10 years ago
- ☆15Jul 16, 2026Updated 3 months ago
- CDR3 clustering module providing a new method for fast and accurate clustering of large data sets of CDR3 amino acid sequences, and offer…☆57Apr 3, 2024Updated 2 years ago
- R implementation of GLIPH (Grouping of Lymphocyte Interactions by Paratope Hotspots), an algorithm developed by Glanville et al to identi…☆29Oct 1, 2022Updated 4 years ago
- TraCeR - reconstruction of T cell receptor sequences from single-cell RNAseq data☆136Nov 28, 2023Updated 2 years ago
- Integrative analysis for scRNA-seq and scTCR-/scBCR-seq data☆22Updated this week
- Git-based antigen specificity database storage & management.☆157Updated this week
- Summary statistics for repertoires☆18Feb 1, 2023Updated 3 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- An ultra-sensitive and precise tool for characterizing T cell CDR3 sequences in TCR-seq and RNA-seq data.☆21Nov 19, 2025Updated 11 months ago
- flexible CDR based distance metrics☆76Dec 16, 2025Updated 10 months ago
- 📝 [Paper/Tutorial] T-cell repertoire annotation and motif discovery☆14Sep 15, 2025Updated last year
- Software tools for the analysis of epitope-specific T cell receptor (TCR) repertoires (scroll down for the README)☆87Oct 6, 2021Updated 5 years ago
- Automated human exome/genome variants detection from FASTQ files☆23Sep 27, 2021Updated 5 years ago
- [DEPRECATED, see https://immunarch.com/] tcR: an R package for immune receptor repertoire advanced data analysis.☆40Jun 8, 2020Updated 6 years ago
- Grouping of Lymphocyte Interactions by Paratope Hotspots☆98Dec 4, 2020Updated 5 years ago
- rm-protection implemented in C☆11Feb 10, 2017Updated 9 years ago
- A pipeline for complete and accurate recovery of TCR repertoires from high throughput sequencing data.☆24Sep 10, 2023Updated 3 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- ☆23Oct 4, 2022Updated 4 years ago
- A novel unsupervised batch removal framework, called iMAP, based on neural networks.☆35Jan 12, 2022Updated 4 years ago
- convert a blast output to a bed file☆12Jun 19, 2015Updated 11 years ago
- ☆14Jun 1, 2026Updated 5 months ago
- ☆10Oct 22, 2018Updated 8 years ago
- Code for "T Cell Receptor Specificity Prediction with Bimodal Attention Networks" (https://doi.org/10.1093/bioinformatics/btab294, ISMB 2…☆31Jul 12, 2025Updated last year
- ☆41Aug 18, 2020Updated 6 years ago
- Detecting TCR involved in immune responses from single RepSeq datasets☆28Jun 17, 2019Updated 7 years ago
- NetTCR-2.0. Sequence-based prediction of peptide-TCR binding☆37Mar 29, 2022Updated 4 years ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- Process SMRT sequencing kinetic summary to predict regional methylation on large genome☆13Dec 4, 2018Updated 7 years ago
- Simultaneous detection of SNPs and Indels using a 16-genotype probabilistic model☆27Dec 26, 2023Updated 2 years ago
- ☆16May 13, 2022Updated 4 years ago
- A package code for fitting power law distributions using Bayesian or Maximum Likelihood approaches.☆12Aug 1, 2019Updated 7 years ago
- Imaging Mass Cytometry (IMC) file type support for napari☆13Jul 8, 2026Updated 3 months ago
- Metascape for Bioinformaticians (MSBio)☆14Jun 30, 2021Updated 5 years ago
- Processing of single cell RNAseq data for the recovery of TCRs in python☆30Nov 25, 2020Updated 5 years ago