vkola-lab / peds2019Links
Quantifying the nativeness of antibody sequences using long short-term memory networks
☆17Updated 3 years ago
Alternatives and similar repositories for peds2019
Users that are interested in peds2019 are comparing it to the libraries listed below
Sorting:
- Code and data used in https://doi.org/10.1101/2021.08.01.454656☆53Updated 3 years ago
- Code for the paper "DLAB - Deep learning methods for structure-basedvirtual screening of antibodies"☆31Updated 2 years ago
- Machine learning models for antibody sequences in PyTorch☆39Updated 4 years ago
- PyTorch implementation of Parapred (Liberis et al., 2018) with Paratyping (Richardson et al., 2021)☆20Updated last year
- Code for the antibody deep learning paper.☆15Updated 3 years ago
- ☆23Updated 3 years ago
- ☆46Updated last year
- Antibody paratope prediction using Graph Neural Networks with minimal feature vectors☆37Updated 2 years ago
- ASAP-SML: An Antibody Sequence Analysis Pipeline Using Statistical Testing and Machine Learning☆11Updated last year
- ☆21Updated 5 months ago
- A convolutional neural network model to predict spatial charge map (SCM) score, a molecular dynamics simulation-based model to predict an…☆26Updated 2 years ago
- An unofficial re-implementation of AntiBERTy, an antibody-specific protein language model, in PyTorch.☆24Updated last year
- Antibody Annotation - Annotate VH and VL sequences (FR and CDR) in Python☆30Updated 2 years ago
- Material to run the HADDOCK antibody-antigen modelling protocol☆22Updated last year
- Repo contains source code of the SurfaceID paper☆23Updated last year
- ☆19Updated 2 months ago
- Tool for modelling the CDRs of antibodies☆48Updated 2 years ago
- ☆20Updated 3 years ago
- ☆41Updated 3 months ago
- KA-Search: Rapid and exhaustive sequence identity search of known antibodies☆22Updated 11 months ago
- The code used to generate the results from Parkinson / Hard et al. 2022☆17Updated last month
- ☆69Updated 4 years ago
- Graphinity: Equivariant Graph Neural Network Architecture for Predicting Change in Antibody-Antigen Binding Affinity☆31Updated 2 months ago
- Codebase for our preprint using trRosetta to design proteins with discontinuous functional sites, found here: https://www.biorxiv.org/con…☆16Updated 3 years ago
- This repository contains the stand-alone tool for MusiteDeep server☆34Updated 4 years ago
- ☆25Updated last year
- This repository contains scripts, data and jupyter notebooks used to produce the evaluation results in the BioPhi 2021 publication☆17Updated 2 years ago
- A bundle of deep-learning packages for biomolecular structure prediction and design contributed to the Rosetta Commons☆35Updated 2 years ago
- The Patent and Literature Antibody Database (PLAbDab): an evolving reference set of functionally diverse, literature-annotated antibody s…☆25Updated 11 months ago
- Bioinformatics and Cheminformatics protocols for peptide analysis☆42Updated 2 years ago