Alternatives and similar repositories for peds2019:

Users that are interested in peds2019 are comparing it to the libraries listed below

• oxpig / Paragraph
  Antibody paratope prediction using Graph Neural Networks with minimal feature vectors
  ☆33Updated last year
• oxpig / dlab-public
  Code for the paper "DLAB - Deep learning methods for structure-basedvirtual screening of antibodies"
  ☆31Updated 2 years ago
• gv20-therapeutics / antibody-in-pytorch
  Machine learning models for antibody sequences in PyTorch
  ☆38Updated 3 years ago
• ywlim / Antibody_deep_learning
  Code for the antibody deep learning paper.
  ☆14Updated 2 years ago
• dina-lab3D / NanoNet
  ☆44Updated last year
• alchemab / parapred-pytorch
  PyTorch implementation of Parapred (Liberis et al., 2018) with Paratyping (Richardson et al., 2021)
  ☆18Updated last year
• oxpig / ABlooper
  Tool for modelling the CDRs of antibodies
  ☆47Updated 2 years ago
• dohlee / antiberty-pytorch
  An unofficial re-implementation of AntiBERTy, an antibody-specific protein language model, in PyTorch.
  ☆24Updated 9 months ago
• alchemab / antiberta
  Public repository describing training and testing of AntiBERTa.
  ☆57Updated last year
• Lailabcode / DeepSCM
  A convolutional neural network model to predict spatial charge map (SCM) score, a molecular dynamics simulation-based model to predict an…
  ☆21Updated 2 years ago
• Furman-Lab / Peptide_docking_with_AF2_and_RosettAfold
  Code and data used in https://doi.org/10.1101/2021.08.01.454656
  ☆53Updated 2 years ago
• xinyu-dev / annotate_v
  Antibody Annotation - Annotate VH and VL sequences (FR and CDR) in Python
  ☆28Updated last year
• Wang-lab-UCSD / RESP
  The code used to generate the results from Parkinson / Hard et al. 2022
  ☆17Updated 2 months ago
• Graylab / deepH3-distances-orientations
  ☆34Updated 3 years ago
• oxpig / PLAbDab
  The Patent and Literature Antibody Database (PLAbDab): an evolving reference set of functionally diverse, literature-annotated antibody s…
  ☆23Updated 6 months ago
• Tessier-Lab-UMich / Emi_Pareto_Opt_ML
  ☆21Updated 2 years ago
• Sanofi-Public / LMR-SurfaceID
  Repo contains source code of the SurfaceID paper
  ☆15Updated 10 months ago
• piercelab / tcrmodel2
  ☆36Updated 3 months ago
• oxpig / Graphinity
  Graphinity: Equivariant Graph Neural Network Architecture for Predicting Change in Antibody-Antigen Binding Affinity
  ☆25Updated 2 weeks ago
• oxpig / SPACE2
  Tool for rapid clustering of antibody models by the structure of their CDRs.
  ☆19Updated 2 months ago
• dahjan / DMS_opt
  ☆68Updated 4 years ago
• haddocking / HADDOCK-antibody-antigen
  Material to run the HADDOCK antibody-antigen modelling protocol
  ☆22Updated last year
• enai4bio / DeepAAI
  DeepAAI
  ☆30Updated 3 weeks ago
• oxpig / kasearch
  KA-Search: Rapid and exhaustive sequence identity search of known antibodies
  ☆21Updated 6 months ago
• HassounLab / ASAP-SML
  ASAP-SML: An Antibody Sequence Analysis Pipeline Using Statistical Testing and Machine Learning
  ☆11Updated last year
• Fleishman-Lab / CUMAb
  ☆19Updated 7 months ago
• csi-greifflab / manuscript_insilico_antibody_generation
  ☆23Updated 3 years ago
• mit-ll / AlphaSeq_Antibody_Dataset
  Dataset with quantitative binding scores of scFv-format antibodies against SARS-CoV-2 target peptide
  ☆21Updated last year
• ba-lab / disteval
  DISTEVAL: A web-server for evaluating protein inter-residue distances
  ☆18Updated 2 years ago
• Merck / BioPhi-2021-publication
  This repository contains scripts, data and jupyter notebooks used to produce the evaluation results in the BioPhi 2021 publication
  ☆15Updated 2 years ago