luisgls / SOPRANOLinks
SelectiOn in PRotein ANnotated regiOns. Adapted dN/dS based method to detect selection in specific protein regions
☆11Updated last year
Alternatives and similar repositories for SOPRANO
Users that are interested in SOPRANO are comparing it to the libraries listed below
Sorting:
- ☆16Updated 2 years ago
- ☆12Updated 4 years ago
- Testing a neutral evolution model on cancer sequencing data☆10Updated 4 years ago
- Model-based subclonal deconvolution from bulk sequencing.☆33Updated this week
- ☆23Updated 3 years ago
- Epigenetic cell-type deconvolution from Single-Cell Omic Reference profiles☆33Updated 4 months ago
- GCAP (Gene-level Circular Amplicon Prediction) firstly implements extrachromosomal DNA detection from whole-exome-sequencing (WES) data a…☆20Updated 7 months ago
- Implementation of FACETS for Terra☆12Updated 2 years ago
- ☆17Updated 2 years ago
- Detection of allele-specific subclonal copy number alterations from single-cell transcriptomic data.☆37Updated 3 weeks ago
- Code accompanying Characterizing genetic intra-tumor heterogeneity across 2,658 human cancer genomes☆43Updated 4 years ago
- Code accompanying "The evolutionary history of 2,658 cancers", Nature 578, 122–128 (2020)☆17Updated 5 years ago
- This repository contains HCA Benchmarking codes☆26Updated 5 years ago
- Code to calculate the Splicing Z Score (SpliZ) for single cell RNA-seq splicing analysis☆34Updated 3 years ago
- ☆22Updated last year
- Analyzing chromatin accessibility data in R☆18Updated 2 years ago
- a computational pipeline for the quantification of the Tumor Immune contexture from human RNA-seq data☆18Updated 4 years ago
- Inference of Minimal Event Distance Aneuploidy Lineage Tree based on single cell copy number profile☆20Updated last year
- ☆12Updated 5 years ago
- Comprehensive pipeline for donor demultiplexing in single cell☆24Updated last week
- Collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using R.☆16Updated 3 years ago
- Tools for assessing clustering robustness☆25Updated last week
- Immune Cell Gene Signatures for Profiling the Microenvironment of Solid Tumours☆27Updated 4 years ago
- R package for Flexible dot plots☆29Updated 3 years ago
- ReMapEnrich is a R-software package to identify significantly enriched regions from ReMap catalogues or user defined catalogues. ReMapEnr…☆15Updated 3 years ago
- SigProfilerTopography allows evaluating the effect of chromatin organization, histone modifications, transcription factor binding, DNA re…☆20Updated last week
- ☆20Updated last year
- Trans-association between HLA and TCR-CDR3☆18Updated 2 years ago
- This repository contains code for the evaluation of epithelial-to-mesenchymal transition states in cancer.☆13Updated 2 years ago
- Gene Expression Decomposition and Integration☆19Updated 6 months ago