luisgls / SOPRANOLinks
SelectiOn in PRotein ANnotated regiOns. Adapted dN/dS based method to detect selection in specific protein regions
☆11Updated last year
Alternatives and similar repositories for SOPRANO
Users that are interested in SOPRANO are comparing it to the libraries listed below
Sorting:
- Testing a neutral evolution model on cancer sequencing data☆10Updated 4 years ago
- ☆25Updated 3 years ago
- Model-based tumour subclonal deconvolution using population genetics☆33Updated last week
- Code and data from Koche et al. Extrachromosomal circular DNA drives oncogenic genome remodeling in neuroblastoma (2020)☆15Updated 5 years ago
- ☆17Updated 2 years ago
- ☆12Updated 4 years ago
- Epigenetic cell-type deconvolution from Single-Cell Omic Reference profiles☆32Updated 7 months ago
- SigProfilerTopography allows evaluating the effect of chromatin organization, histone modifications, transcription factor binding, DNA re…☆22Updated 3 months ago
- Implementation of FACETS for Terra☆12Updated 2 years ago
- a computational pipeline for the quantification of the Tumor Immune contexture from human RNA-seq data☆18Updated 4 years ago
- Code to calculate the Splicing Z Score (SpliZ) for single cell RNA-seq splicing analysis☆35Updated 3 years ago
- ☆20Updated 2 years ago
- TRUST4 manuscript evaluation☆15Updated 3 years ago
- Immune Cell Gene Signatures for Profiling the Microenvironment of Solid Tumours☆27Updated 4 years ago
- Detection of allele-specific subclonal copy number alterations from single-cell transcriptomic data.☆38Updated last week
- Trans-association between HLA and TCR-CDR3☆18Updated 2 years ago
- ☆16Updated 2 years ago
- ☆23Updated last year
- Tools for assessing clustering robustness☆28Updated 2 months ago
- Code accompanying Characterizing genetic intra-tumor heterogeneity across 2,658 human cancer genomes☆44Updated 4 years ago
- TIGS (Tumor Immunogenicity Score) project https://doi.org/10.7554/eLife.49020☆33Updated 4 years ago
- This repository contains code for the evaluation of epithelial-to-mesenchymal transition states in cancer.☆13Updated 2 years ago
- Analyzing chromatin accessibility data in R☆18Updated 2 years ago
- GCAP (Gene-level Circular Amplicon Prediction) firstly implements extrachromosomal DNA detection from whole-exome-sequencing (WES) data a…☆20Updated 2 months ago
- ☆15Updated 8 months ago
- Toolkit for single-cell copy number analysis☆24Updated 4 months ago
- Analysis pipeline for our circSC manuscript☆14Updated 3 years ago
- scover☆24Updated 2 years ago
- Comprehensive pipeline for donor demultiplexing in single cell☆24Updated this week
- Single-cell Case Control Analysis☆52Updated 2 weeks ago