UCSF-DSCOLAB / pan_cancer_immune_archetypes
☆12Updated 3 weeks ago
Alternatives and similar repositories for pan_cancer_immune_archetypes:
Users that are interested in pan_cancer_immune_archetypes are comparing it to the libraries listed below
- ☆12Updated 9 months ago
- Robust identification of perturbed cell types in single-cell RNA-seq data☆31Updated 5 months ago
- Hierarchical Cell Annotation☆20Updated 5 months ago
- An R shiny based tool used for single cell RNA-seq data visualization and analysis.☆33Updated 4 years ago
- Repository for the building, sharing and editing of scRNAseq pipelines for the Lung Cell Atlas☆36Updated 4 years ago
- ☆20Updated last year
- ☆13Updated last year
- Aligning gene expression trajectories of single-cell reference and query systems☆63Updated 6 months ago
- Unsupervised Inference of Developmental Directions for Single Cells☆21Updated last year
- A manually curated database of literature-supported ligand-receptor interactions in human and mouse☆30Updated 9 months ago
- Infer Copy Number Alterations and Clonality in (Single-Cell) RNA-Seq Data☆35Updated last year
- Single Cell Analysis Operations☆13Updated last month
- ☆46Updated 5 years ago
- ☆22Updated 2 years ago
- Data available at: https://www.dropbox.com/sh/jh4s57kgbb0rnxe/AABoMK466cGc1OKsOuFN10wca?dl=0 and https://nyulangone-my.sharepoint.com//g/…☆30Updated 2 years ago
- Code used to run the data analysis in the hdWGCNA manuscript (Morabito et al 2022)☆16Updated last year
- ☆13Updated last year
- Cluster Identity Predictor (R package implementation)☆20Updated 3 years ago
- ☆37Updated 2 years ago
- A minimal gene set characterizes multiple classes of tumor-specific TIL among different cancer types☆11Updated last month
- Nuclear fraction QC metric to detect empty droplets and damaged cells in scRNA-seq data☆37Updated 3 years ago
- ☆15Updated 2 years ago
- Dissecting the effects of DNA copy number variations on transcriptional programs at single-cell resolution☆13Updated 3 years ago
- scGSVA: Perform GSVA for single cell RNA seq☆55Updated 5 months ago
- Inferring CNV data from single cell ATAC seq☆23Updated last year
- R package for decontaminating the spot swapping effect and recovering true expression in spatial transcriptomics data☆31Updated 10 months ago
- FitDevo: accurate inference of single-cell developmental potential using sample-specific gene weight☆16Updated last year
- MERCI for tracing of mitochondrion transfer between single cancer and T cells☆21Updated 11 months ago
- Estimation of Single-Cell Potency with Single Cell Entropy☆40Updated 2 years ago
- A unified interface to spatial transcriptomics deconvolution tools☆41Updated last week