Alternatives and similar repositories for immune_deconvolution_benchmark

Users that are interested in immune_deconvolution_benchmark are comparing it to the libraries listed below

• bvieth / scRNA-seq-pipelines
  Compendium to "A Systematic Evaluation of Single Cell RNA-Seq Analysis Pipelines"
  ☆55Updated 4 years ago
• cansysbio / ConsensusTME
  ConsensusTME Gene Sets and R Script
  ☆39Updated last year
• shenorrLabTRDF / bseqsc
  Bulk-Sequence Single-Cell Gene Expression Deconvolution Pipeline
  ☆46Updated 2 years ago
• qianhuiSenn / scRNA_cell_deconv_benchmark
  Evaluation of Cell Type Annotation R Packages on Single Cell RNA-seq Data
  ☆29Updated last year
• icbi-lab / Immunophenogram
  ☆41Updated 7 years ago
• combiz / scFlow
  Single-cell/nuclei RNA-seq analysis tools in R for a complete workflow.
  ☆57Updated last week
• dan-landau / IronThrone-GoT
  processes GoT amplicon data and generates a table of metrics
  ☆32Updated 3 years ago
• JEFworks / MUDAN
  Multi-sample Unified Discriminant ANalysis
  ☆75Updated 2 years ago
• shenorrLabTRDF / cellAlign
  ☆43Updated 5 years ago
• GreenleafLab / motifmatchr
  Fast motif matching in R
  ☆46Updated 2 years ago
• elimereu / matchSCore2
  ☆56Updated 5 years ago
• shendurelab / single-cell-ko-screens
  Repository containing all code for secondary analysis in the manuscript "On the design of CRISPR-based single cell molecular screens", Hi…
  ☆26Updated 4 years ago
• YosefLab / scone
  ☆55Updated 11 months ago
• crazyhottommy / scRNA-seq-workshop-Fall-2019
  Harvard FAS informatics scRNAseq workshop website
  ☆38Updated 6 years ago
• lmweber / deconvolution-papers
  List of papers on deconvolution of cell types in bulk RNA-seq based on single-cell signatures
  ☆18Updated 5 years ago
• GreenleafLab / chromVARmotifs
  R package with motifs for use with chromVAR
  ☆28Updated 8 years ago
• McGranahanLab / TcellExTRECT
  ☆48Updated last year
• lagelab / quack
  Machine learning algorithm to predict biological pathway relationships based on functional genomics networks
  ☆20Updated 7 years ago
• foreverdream2 / dysfunction_interaction_test
  ☆30Updated 7 years ago
• crazyhottommy / scATACutils
  R/Bioconductor package for working with 10x scATACseq data
  ☆41Updated 2 years ago
• JEFworks / liger
  Lightweight Iterative Gene set Enrichment in R
  ☆58Updated last year
• aertslab / SCopeLoomR
  R package (compatible with SCope) to create generic .loom files and extend them with other data e.g.: SCENIC regulons, Seurat clusters an…
  ☆47Updated 3 years ago
• single-cell-genetics / cardelino
  Clone identification from single-cell data
  ☆61Updated 3 years ago
• satijalab / azimuth-references
  ☆26Updated 8 months ago
• lanagarmire / SSrGE
  ☆34Updated 6 years ago
• sigven / oncoEnrichR
  Explore the cancer relevance of your gene list
  ☆52Updated last month
• cole-trapnell-lab / cicero-release
  ☆59Updated last year
• PCAWG-11 / Heterogeneity
  Code accompanying Characterizing genetic intra-tumor heterogeneity across 2,658 human cancer genomes
  ☆44Updated 4 years ago
• hemberg-lab / scfind
  ☆43Updated 2 years ago
• shendurelab / mouse-atac
  Repo for website and other code for mouse sci-ATAC-seq project
  ☆29Updated 5 years ago