icbi-lab / immune_deconvolution_benchmarkLinks
Reproducible pipeline for "Comprehensive evaluation of cell-type quantification methods for immuno-oncology", Sturm et al. 2019, https://doi.org/10.1093/bioinformatics/btz363
☆42Updated 4 years ago
Alternatives and similar repositories for immune_deconvolution_benchmark
Users that are interested in immune_deconvolution_benchmark are comparing it to the libraries listed below
Sorting:
- ☆41Updated 4 years ago
- Evaluation of Cell Type Annotation R Packages on Single Cell RNA-seq Data☆29Updated last year
- Bulk-Sequence Single-Cell Gene Expression Deconvolution Pipeline☆45Updated last year
- CONICS: COpy-Number analysis In single-Cell RNA-Sequencing☆74Updated 2 years ago
- ☆34Updated 5 years ago
- ☆40Updated 7 years ago
- scRNA-seq cell type identification☆43Updated 5 years ago
- Algorithm for the inference of cell types from single-cell RNA-seq data.☆44Updated 9 years ago
- ConsensusTME Gene Sets and R Script☆39Updated 11 months ago
- Identify and correct invalid gene symbols☆58Updated 6 months ago
- post-clustering differential expression test☆35Updated 6 years ago
- ☆37Updated 8 years ago
- Cluster single cells and analyze cell clade relationships with colorful visualizations.☆45Updated 3 years ago
- A study to compare methods for clustering of scRNA-seq data☆43Updated 10 months ago
- Scripts to run and benchmark scRNA-seq cell cluster labeling methods☆47Updated 5 years ago
- ☆29Updated 6 years ago
- processes GoT amplicon data and generates a table of metrics☆29Updated 2 years ago
- Linseed: LINear Subspace identification for gene Expresion Deconvolution☆30Updated 3 weeks ago
- ☆14Updated last month
- ☆47Updated 4 months ago
- ☆35Updated 2 months ago
- epigenome analysis to rank transcription factors☆30Updated 2 years ago
- supporting code for the multinomial single cell RNA-Seq paper☆51Updated 4 years ago
- R/Bioconductor package for working with 10x scATACseq data☆40Updated last year
- Bioconductor package esATAC: an Easy-to-use Systematic pipeline for ATAC-seq data analysis☆23Updated 2 years ago
- Methods to use SNPs or gene expression to classify single cell RNAseq to reference profiles☆29Updated 5 years ago
- Clone of the Bioconductor repository for the scran package.☆41Updated 9 months ago
- Code accompanying Characterizing genetic intra-tumor heterogeneity across 2,658 human cancer genomes☆43Updated 4 years ago
- Compendium to "A Systematic Evaluation of Single Cell RNA-Seq Analysis Pipelines"☆54Updated 4 years ago
- R package for robust clustering of single cell RNA sequencing data☆39Updated last year