icbi-lab / immune_deconvolution_benchmarkLinks
Reproducible pipeline for "Comprehensive evaluation of cell-type quantification methods for immuno-oncology", Sturm et al. 2019, https://doi.org/10.1093/bioinformatics/btz363
☆43Updated 5 years ago
Alternatives and similar repositories for immune_deconvolution_benchmark
Users that are interested in immune_deconvolution_benchmark are comparing it to the libraries listed below
Sorting:
- Compendium to "A Systematic Evaluation of Single Cell RNA-Seq Analysis Pipelines"☆54Updated 4 years ago
- Bulk-Sequence Single-Cell Gene Expression Deconvolution Pipeline☆45Updated 2 years ago
- ConsensusTME Gene Sets and R Script☆39Updated last year
- Repository containing all code for secondary analysis in the manuscript "On the design of CRISPR-based single cell molecular screens", Hi…☆26Updated 3 years ago
- ☆55Updated 4 years ago
- processes GoT amplicon data and generates a table of metrics☆31Updated 3 years ago
- ☆34Updated 6 years ago
- Single-cell Scalable Visualization and Analytics☆26Updated 6 years ago
- CONICS: COpy-Number analysis In single-Cell RNA-Sequencing☆74Updated 2 years ago
- ☆40Updated 7 years ago
- ☆30Updated 7 years ago
- Harvard FAS informatics scRNAseq workshop website☆38Updated 5 years ago
- A R framework for pipeline benchmarking, with application to single-cell RNAseq☆41Updated 3 years ago
- Fast motif matching in R☆46Updated last year
- Clone identification from single-cell data☆61Updated 2 years ago
- CellR: single-cell RNA-Seq guided deconvolution of cellular composition from bulk-tissue RNA-Seq☆18Updated 4 years ago
- Multi-sample Unified Discriminant ANalysis☆73Updated 2 years ago
- Code accompanying Characterizing genetic intra-tumor heterogeneity across 2,658 human cancer genomes☆43Updated 4 years ago
- Repo for website and other code for mouse sci-ATAC-seq project☆28Updated 4 years ago
- A suite of population scale analysis tools for single-cell genomics data including implementation of Demuxlet / Freemuxlet methods and au…☆55Updated 4 years ago
- Adaptive Daisy Model to discriminate core-fitness/context-specific essential genes in large scale CRISPR-Cas9 screens☆23Updated 6 years ago
- ☆55Updated 5 months ago
- R/Bioconductor package for working with 10x scATACseq data☆40Updated last year
- A study to compare methods for clustering of scRNA-seq data☆43Updated last year
- Figure depicting the breadth of multimodal scRNA-seq technologies☆16Updated 6 years ago
- ☆47Updated 6 months ago
- Immune Cell Gene Signatures for Profiling the Microenvironment of Solid Tumours☆27Updated 4 years ago
- supporting code for the multinomial single cell RNA-Seq paper☆52Updated 4 years ago
- Alleloscope is a method for allele-specific copy number estimation that can be applied to single cell DNA and ATAC sequencing data (separ…☆29Updated 2 years ago
- Bioconductor package esATAC: an Easy-to-use Systematic pipeline for ATAC-seq data analysis☆23Updated 2 years ago