icbi-lab / immune_deconvolution_benchmark
Reproducible pipeline for "Comprehensive evaluation of cell-type quantification methods for immuno-oncology", Sturm et al. 2019, https://doi.org/10.1093/bioinformatics/btz363
☆41Updated 4 years ago
Related projects: ⓘ
- scRNA-seq cell type identification☆41Updated 4 years ago
- ☆36Updated 3 years ago
- ☆33Updated 5 years ago
- Bulk-Sequence Single-Cell Gene Expression Deconvolution Pipeline☆42Updated last year
- ConsensusTME Gene Sets and R Script☆38Updated 3 months ago
- Compendium to "A Systematic Evaluation of Single Cell RNA-Seq Analysis Pipelines"☆53Updated 3 years ago
- CONICS: COpy-Number analysis In single-Cell RNA-Sequencing☆73Updated last year
- Clone identification from single-cell data☆57Updated last year
- ☆29Updated 6 years ago
- Explore and share your scRNAseq clustering results☆46Updated last year
- scWGCNA☆53Updated last year
- ☆40Updated 6 years ago
- a computational pipeline for the quantification of the Tumor Immune contexture from human RNA-seq data☆18Updated 3 years ago
- NATMI: Network Analysis Toolkit for the Multicellular Interactions☆33Updated 3 years ago
- ☆35Updated 8 years ago
- Cluster single cells and analyze cell clade relationships with colorful visualizations.☆45Updated 3 years ago
- Clone of the Bioconductor repository for the scran package.☆40Updated 2 weeks ago
- A study to compare methods for clustering of scRNA-seq data☆41Updated 2 months ago
- Single-Cell Sequencing Quality Control and Processing Software☆30Updated 5 years ago
- Fast motif matching in R☆41Updated 7 months ago
- Bioconductor package esATAC: an Easy-to-use Systematic pipeline for ATAC-seq data analysis☆23Updated 2 years ago
- Evaluation of Cell Type Annotation R Packages on Single Cell RNA-seq Data☆29Updated 6 months ago
- List of papers on deconvolution of cell types in bulk RNA-seq based on single-cell signatures☆18Updated 4 years ago
- Negative binomial regression for Spatial Transcriptomics data as described in Maaskola et al. 2018☆21Updated 5 years ago
- A method to rapidly assess cell type identity using both functional and random gene sets☆32Updated last year
- Single-cell/nuclei RNA-seq analysis tools in R for a complete workflow.☆54Updated 6 months ago
- A tool for unsupervised projection of single cell RNA-seq data☆88Updated 3 years ago
- Scripts for processing single liver cells RNA-Seq 10X Genomics Data☆23Updated 5 years ago
- epigenome analysis to rank transcription factors☆28Updated last year
- ☆30Updated 5 years ago