mikessh / migmapLinks
HTS-compatible wrapper for IgBlast V-(D)-J mapping tool
☆52Updated 9 months ago
Alternatives and similar repositories for migmap
Users that are interested in migmap are comparing it to the libraries listed below
Sorting:
- IGoR is a C++ software designed to infer V(D)J recombination related processes from sequencing data. Find full documentation at:☆51Updated 3 years ago
- B- and T-cell receptor sequence annotation, simulation, clonal family and germline inference, and affinity prediction☆59Updated this week
- MuPeXI: the mutant peptide extractor and informer, a tool for predicting neo-epitopes from tumor sequencing data.☆51Updated 5 years ago
- Parsing tools for GTF (gene transfer format) files☆121Updated 6 months ago
- ☆48Updated 3 years ago
- predicting peptide and TCR interaction☆20Updated 4 years ago
- Regression-based annotation of protein-coding sequences from ribosome profiling data☆32Updated 5 years ago
- ☆38Updated last year
- A pipeline for complete and accurate recovery of TCR repertoires from high throughput sequencing data.☆23Updated last year
- Decombinator v5: fast, error-correcting analysis of TCR repertoires☆27Updated last week
- A RepSeq processing swiss-knife☆41Updated last year
- Capturing protein-RNA interaction footprints from single-nucleotide CLIP-seq data☆32Updated 4 years ago
- BAGEL software☆28Updated last year
- Code and data used in The Great Repertoire Project☆30Updated 4 years ago
- Python interface to running command-line and web-based MHC binding predictors☆98Updated 10 months ago
- immuneML is a platform for machine learning analysis of adaptive immune receptor repertoire data.☆68Updated last week
- 3D hotspot mutation proximity analysis tool☆47Updated 2 years ago
- CADD scripts release for offline scoring. For more information about CADD, please visit our website☆85Updated 3 months ago
- Rep-Seq data analysis tutorial☆11Updated 7 years ago
- pTuneos: prioritizing Tumor neoantigen from next-generation sequencing data☆36Updated 3 years ago
- [Deprecated, see https://github.com/antigenomics/mirpy and other tools @antigenomics] Post-analysis of immune repertoire sequencing data☆141Updated last year
- An ultrafast and versatile algorithm that searches for potential off-target sites of CRISPR/Cas-derived RNA-guided endonucleases.☆93Updated 2 years ago
- Python biomart API☆68Updated 2 years ago
- predicts neoepitopes from phased somatic mutations detected using tumor/normal DNA-seq data☆27Updated last year
- IMGT segment library converted to RepSeq.IO JSON format☆13Updated 2 years ago
- Neoantigens prediction pipeline for multi- or single-region vcf files using ANNOVAR and netMHCpan.☆111Updated 11 months ago
- A guide to running MaxQuant in Linux☆34Updated 5 years ago
- A simple pythonic interface to biomart.☆56Updated 5 years ago
- IPAW: a Nextflow workflow for proteogenomics☆28Updated last year
- Saluki, a method to predict mRNA half-lives from sequence☆25Updated 2 years ago