krejciadam / hammockLinks
Cluster up to millions of peptide sequences on shared sequence motifs.
☆12Updated 7 years ago
Alternatives and similar repositories for hammock
Users that are interested in hammock are comparing it to the libraries listed below
Sorting:
- Python package and command line tool for epitope prediction☆52Updated last year
- PSIPRED Protein Secondary Structure Predictor☆58Updated 3 months ago
- VDJ assignment and antibody sequence annotation. Scalable from a single sequence to billions of sequences.☆43Updated 2 months ago
- Evolutionary conservation estimation of residues or nucleotides☆51Updated 3 years ago
- ☆39Updated 4 years ago
- Prediction of binding residues for metal ions, nucleic acids, and small molecules.☆34Updated last month
- A platform to do RNA science☆27Updated 4 years ago
- A Python platform for Structural Bioinformatics☆57Updated 7 months ago
- ☆30Updated 5 months ago
- Fast, state-of-the-art ab initio prediction of protein secondary structure in 3 and 8 classes☆46Updated 5 years ago
- BRENDA parser in python☆22Updated 3 years ago
- Singularity recipe for AlphaFold☆36Updated 11 months ago
- Python package for peptide sequence generation, peptide descriptor calculation and sequence analysis.☆61Updated 7 months ago
- bpRNA: Large-scale Annotation and Analysis of RNA Secondary Structure☆50Updated last year
- scripts and facilities for in-silico mutagenesis with FoldX☆61Updated 3 months ago
- A software-suite to perform multiple protein structure alignment and structure feature extraction.☆31Updated 2 years ago
- Rendering protein mutation movies from predicted 3D structures☆20Updated last year
- Peptide library design☆23Updated 5 years ago
- METIS: A versatile active learning workflow for optimization of genetic and metabolic networks☆30Updated 2 years ago
- a collection of colabs useful for molecular biology☆31Updated last year
- A tool for accurate prediction of a protein's secondary structure from only it's amino acid sequence☆60Updated 6 months ago
- Deep-learning empowered prediction and generation of immunogenic epitopes for T cell immunity☆73Updated 2 years ago
- Visualise RNA secondary structure in consistent, reproducible and recognisable layouts☆75Updated 3 months ago
- Evolutionary velocity with protein language models☆94Updated 2 years ago
- Pipeline for assessing the tractability of potential targets (starting from Gene IDs)☆27Updated 8 months ago
- The MPI Bioinformatics Toolkit☆69Updated 3 months ago
- ☆25Updated last year
- Code and data to reproduce analyses in Biswas et al. (2020) "Low-N protein engineering with data-efficient deep learning".☆59Updated 4 years ago
- Prediction of protein substitution impact using a directional substitution matrix and homolog alignments☆12Updated 4 years ago
- Graph-based community clustering approach to extract protein domains from a predicted aligned error matrix☆35Updated 3 years ago