Alternatives and similar repositories for tcrdist2

Users that are interested in tcrdist2 are comparing it to the libraries listed below

• matsengrp / sumrep
  Summary statistics for repertoires
  ☆17Updated 2 years ago
• mainciburu / WAT3R
  Workflow for the Association of T-cell receptors from 3' single-cell RNA-seq (WAT3R)
  ☆21Updated 2 years ago
• de-Boer-Lab / MAUDE
  Mean Alterations Using Discrete Expression
  ☆14Updated last year
• antigenomics / vdjmatch
  ⚙️ Matching T-cell repertoire against a database of TCR antigen specificities
  ☆38Updated 6 years ago
• RGLab / covid19_sc
  Processing workflow for COVID-19 single cell data
  ☆17Updated 3 years ago
• ElementoLab / scTCRseq
  Processing of single cell RNAseq data for the recovery of TCRs in python
  ☆28Updated 4 years ago
• SydneyBioX / CiteFuse
  CiteFuse:
  ☆28Updated 2 years ago
• broadinstitute / mix_seq_ms
  Code associated with MIX-seq manuscript
  ☆15Updated 4 years ago
• pogorely / ALICE
  Detecting TCR involved in immune responses from single RepSeq datasets
  ☆27Updated 6 years ago
• ajitjohnson / imsig
  Immune Cell Gene Signatures for Profiling the Microenvironment of Solid Tumours
  ☆27Updated 4 years ago
• francescojm / ADAM
  Adaptive Daisy Model to discriminate core-fitness/context-specific essential genes in large scale CRISPR-Cas9 screens
  ☆23Updated 6 years ago
• SchubertLab / mvTCR_reproducibility
  Reproducibility Repo for mvTCR paper
  ☆13Updated last year
• sigven / oncoEnrichR
  Explore the cancer relevance of your gene list
  ☆51Updated 3 months ago
• wwylab / DeMixT
  ☆36Updated 11 months ago
• lkmklsmn / insct
  scRNAseq integration with triplet neural networks
  ☆41Updated 2 years ago
• KseniaMIPT / tcrgrapher
  ☆10Updated last month
• tianshilu / QBRC-Neoantigen-Pipeline
  QBRC Neoantigen calling pipeline with CSiN calculation embedded
  ☆24Updated 3 years ago
• brianhie / trajectorama
  Multi-study integration of cellular trajectories
  ☆19Updated 5 years ago
• HelenaLC / muscat-comparison
  ☆12Updated last year
• klarman-cell-observatory / perturbseq
  Perturb-seq analysis package
  ☆14Updated last year
• Winnie09 / imputationBenchmark
  benchmark for single-cell RNA-seq imputation methods
  ☆26Updated last year
• arnavm / multimodal-scRNA-seq
  Figure depicting the breadth of multimodal scRNA-seq technologies
  ☆16Updated 6 years ago
• klarman-cell-observatory / scSVA
  Single-cell Scalable Visualization and Analytics
  ☆25Updated 6 years ago
• Teichlab / cellity
  ☆37Updated 8 years ago
• pachterlab / GFCP_2022
  RNA velocity validation
  ☆22Updated 3 years ago
• shenorrLabTRDF / cellAlign
  ☆41Updated 4 years ago
• RGLab / FAUST
  Full annotation using shape-constrained trees
  ☆25Updated last year
• GreenleafLab / motifmatchr
  Fast motif matching in R
  ☆47Updated last year
• BorchLab / Ibex
  Using BCR and expression for sequence embedding
  ☆22Updated last week
• immunogenomics / amp_phase1_ra
  Zhang, et al, Nature Immunology, 2019. Use single-cell transcriptomics and proteomics to study autoimmune diseases.
  ☆20Updated 3 months ago