kmayerb / tcrdist2Links
Quantifiable predictive features define epitope-specific T cell receptor repertoires
☆13Updated 2 years ago
Alternatives and similar repositories for tcrdist2
Users that are interested in tcrdist2 are comparing it to the libraries listed below
Sorting:
- Summary statistics for repertoires☆17Updated 2 years ago
- Single-cell Scalable Visualization and Analytics☆26Updated 6 years ago
- Fast motif matching in R☆46Updated last year
- ⚙️ Matching T-cell repertoire against a database of TCR antigen specificities☆39Updated 6 years ago
- ☆12Updated last year
- Causal inference, differential expression, and co-expression for scRNA-seq☆18Updated 3 years ago
- Reproducible pipeline for "Comprehensive evaluation of cell-type quantification methods for immuno-oncology", Sturm et al. 2019, https://…☆43Updated 5 years ago
- QBRC Neoantigen calling pipeline with CSiN calculation embedded☆24Updated 3 years ago
- Single-Cell Sequencing Quality Control and Processing Software☆30Updated 6 years ago
- benchmark for single-cell RNA-seq imputation methods☆28Updated last year
- Code associated with MIX-seq manuscript☆15Updated 5 years ago
- This repository aims to serve as an index of the work described at Salmen & De Jonghe et. al 2022☆24Updated 3 years ago
- BingleSeq - A user-friendly R package for Bulk and Single-cell RNA-Seq data analyses☆22Updated 4 years ago
- ☆37Updated 3 weeks ago
- A single-cell and spatial RNA-seq database for Alzheimer’s Disease☆26Updated last year
- epigenome analysis to rank transcription factors☆13Updated 5 years ago
- Integrative analysis for scRNA-seq and scTCR-/scBCR-seq data☆20Updated last week
- Immune Cell Gene Signatures for Profiling the Microenvironment of Solid Tumours☆27Updated 4 years ago
- Processing workflow for COVID-19 single cell data☆17Updated 3 years ago
- ImReP is a computational method for rapid and accurate profiling of the adaptive immune repertoire from regular RNA-Seq data.☆29Updated 6 years ago
- An R package to implement Differential Gene Set Enrichment Analysis (DGSEA): A statistical approach to quantify the relative enrichment o…☆14Updated 2 years ago
- Code to run OncoSig Analyses☆18Updated 5 years ago
- Hierarchical HotNet is an algorithm for finding hierarchies of active subnetworks.☆38Updated 6 years ago
- metadata and data from the database☆41Updated 5 years ago
- Explore the cancer relevance of your gene list☆52Updated last month
- Methods to use SNPs or gene expression to classify single cell RNAseq to reference profiles☆29Updated 5 years ago
- ☆18Updated 4 years ago
- Workshop: RNA-seq analysis is easy as 1-2-3 with limma, Glimma and edgeR☆15Updated 4 years ago
- CiteFuse:☆28Updated 2 years ago
- Explore and download data from the recount3 project☆36Updated last month