matsengrp / vampireLinks
🧛 Deep generative models for TCR sequences 🧛
☆17Updated 3 years ago
Alternatives and similar repositories for vampire
Users that are interested in vampire are comparing it to the libraries listed below
Sorting:
- ☆38Updated 2 years ago
- ERGO is a deep learing based model for predicting TCR-peptide binding.☆18Updated 3 years ago
- Official repository for the paper "Large-scale clinical interpretation of genetic variants using evolutionary data and deep learning". Jo…☆67Updated 3 years ago
- Modeling of human 5′ UTRs enables the design of new sequences for target levels of translation and 5′ UTR variant prediction.☆57Updated 6 years ago
- HLA-II ligand predictor.☆46Updated 2 years ago
- HLA-I ligand predictor☆43Updated 4 months ago
- Python package and command line tool for epitope prediction☆52Updated last year
- Stochastic Sequence Propagation - A Keras Model for optimizing DNA, RNA and protein sequences based on a predictor☆50Updated last year
- Scripts for "Determining protein structures using deep mutagenesis", Schmiedel & Lehner, Nature Genetics, 2019☆19Updated 6 years ago
- RiboNN: predicting translation efficiencies from mRNA sequences☆50Updated last month
- MHC Class I and Class II neoantigen binding prediction☆34Updated 6 months ago
- Code for "Optimizing 5’UTRs for mRNA-delivered gene editing using deep learning"☆24Updated last year
- FREE Divergence Error-Correcting DNA Barcodes☆28Updated last year
- Epitope immunogenicity prediction through in silico TCR-peptide contact potential profiling.☆25Updated 2 years ago
- Deep Learning Method to Identify Cancer Associated TCRs☆46Updated 3 years ago
- Knowledge-primed neural networks☆38Updated 2 years ago
- Deep-learning empowered prediction and generation of immunogenic epitopes for T cell immunity☆75Updated 2 years ago
- We present Envision, an accurate predictor of protein variant molecular effect, trained using large-scale experimental mutagenesis data. …☆19Updated 8 years ago
- a framework for predicting global protein-protein interaction networks from dynamic mass spec data☆24Updated last year
- Deep learning model to predict degron sequences☆19Updated 2 years ago
- GraphProt: modelling binding preferences of RNA-binding proteins☆20Updated 7 years ago
- VDJ assignment and antibody sequence annotation. Scalable from a single sequence to billions of sequences.☆44Updated 3 weeks ago
- A software-suite to perform multiple protein structure alignment and structure feature extraction.☆31Updated 2 years ago
- Annotation of mutated peptide sequences with published or novel potential neoantigen descriptors☆34Updated 2 weeks ago
- A Python tool for prediction MHC ligand☆34Updated 7 years ago
- Comparison of Adaptive Immune Receptor Repertoires☆28Updated last year
- B- and T-cell receptor sequence annotation, simulation, clonal family and germline inference, and affinity prediction☆62Updated this week
- Code for the analyses in the human reference interactome paper.☆28Updated 3 years ago
- Machine learning workflows for analyzing high-throughput protein data☆26Updated 9 years ago
- A deep learning approach for predicting high-confidence neoantigens by considering both the presentation possibilities of mutant peptides…☆44Updated 2 years ago