matsengrp / vampireLinks
🧛 Deep generative models for TCR sequences 🧛
☆17Updated 3 years ago
Alternatives and similar repositories for vampire
Users that are interested in vampire are comparing it to the libraries listed below
Sorting:
- ERGO is a deep learing based model for predicting TCR-peptide binding.☆18Updated 3 years ago
- Modeling of human 5′ UTRs enables the design of new sequences for target levels of translation and 5′ UTR variant prediction.☆53Updated 6 years ago
- HLA-I ligand predictor☆43Updated last month
- HLA-II ligand predictor.☆45Updated 2 years ago
- Python package and command line tool for epitope prediction☆52Updated last year
- Stochastic Sequence Propagation - A Keras Model for optimizing DNA, RNA and protein sequences based on a predictor☆50Updated last year
- Scripts for "Determining protein structures using deep mutagenesis", Schmiedel & Lehner, Nature Genetics, 2019☆17Updated 6 years ago
- Deep-learning empowered prediction and generation of immunogenic epitopes for T cell immunity☆73Updated 2 years ago
- MHC Class I and Class II neoantigen binding prediction☆32Updated 3 months ago
- RiboNN: predicting translation efficiencies from mRNA sequences☆42Updated last month
- Official repository for the paper "Large-scale clinical interpretation of genetic variants using evolutionary data and deep learning". Jo…☆65Updated 3 years ago
- Code for "Optimizing 5’UTRs for mRNA-delivered gene editing using deep learning"☆23Updated last year
- ☆38Updated last year
- Machine learning workflows for analyzing high-throughput protein data☆26Updated 8 years ago
- Amino acid embedding and Convolutional Neural Network for HLA Class I-peptide binding prediction☆26Updated 8 years ago
- a framework for predicting global protein-protein interaction networks from dynamic mass spec data☆24Updated last year
- ☆25Updated last year
- Interpretation by Deep Generative Masking for Biological Sequences☆37Updated 3 years ago
- Deep learning model to predict degron sequences☆19Updated 2 years ago
- A Python tool for prediction MHC ligand☆34Updated 6 years ago
- Absolve antibody variable domain sequence analysis☆18Updated 7 years ago
- VDJ assignment and antibody sequence annotation. Scalable from a single sequence to billions of sequences.☆44Updated 3 months ago
- ☆59Updated 8 years ago
- an online cancer cell line catalogue integrating HLA type, predicted neo-epitopes, virus and gene expression☆11Updated last year
- We present Envision, an accurate predictor of protein variant molecular effect, trained using large-scale experimental mutagenesis data. …☆17Updated 7 years ago
- "Representation Learning of Genomic Sequence Motifs with Convolutional Neural Networks" by Peter K. Koo and Sean R. Eddy☆33Updated 5 years ago
- STAPLER (Shared TCR And Peptide Language bidirectional Encoder Representations from transformers) is a language model that uses a joint T…☆28Updated 6 months ago
- ☆17Updated 3 years ago
- GraphProt: modelling binding preferences of RNA-binding proteins☆20Updated 7 years ago
- A platform to do RNA science☆27Updated 4 years ago