matsengrp / vampireLinks
🧛 Deep generative models for TCR sequences 🧛
☆17Updated 3 years ago
Alternatives and similar repositories for vampire
Users that are interested in vampire are comparing it to the libraries listed below
Sorting:
- Modeling of human 5′ UTRs enables the design of new sequences for target levels of translation and 5′ UTR variant prediction.☆49Updated 6 years ago
- ERGO is a deep learing based model for predicting TCR-peptide binding.☆17Updated 2 years ago
- HLA-II ligand predictor.☆44Updated 2 years ago
- ☆38Updated last year
- Stochastic Sequence Propagation - A Keras Model for optimizing DNA, RNA and protein sequences based on a predictor☆48Updated 11 months ago
- HLA-I ligand predictor☆41Updated 6 months ago
- MHC Class I and Class II neoantigen binding prediction☆30Updated 2 years ago
- Python package and command line tool for epitope prediction☆51Updated 11 months ago
- Deep-learning empowered prediction and generation of immunogenic epitopes for T cell immunity☆70Updated 2 years ago
- Code for "Optimizing 5’UTRs for mRNA-delivered gene editing using deep learning"☆21Updated last year
- Repository for code for mapping sequence data to structural datasets.☆8Updated 6 years ago
- Amino acid embedding and Convolutional Neural Network for HLA Class I-peptide binding prediction☆26Updated 7 years ago
- Detects hotspot regions for somatic mutations in 3D protein structures☆3Updated last year
- Scripts for "Determining protein structures using deep mutagenesis", Schmiedel & Lehner, Nature Genetics, 2019☆17Updated 6 years ago
- Official repository for the paper "Large-scale clinical interpretation of genetic variants using evolutionary data and deep learning". Jo…☆66Updated 2 years ago
- Interpretation by Deep Generative Masking for Biological Sequences☆37Updated 3 years ago
- Epitope immunogenicity prediction through in silico TCR-peptide contact potential profiling.☆24Updated last year
- Deep learning model to predict degron sequences☆20Updated 2 years ago
- Scripts for building computational models of gene regulation with tensorflow☆27Updated 2 years ago
- A Python tool for prediction MHC ligand☆34Updated 6 years ago
- Machine learning workflows for analyzing high-throughput protein data☆26Updated 8 years ago
- ☆17Updated 3 years ago
- DLPRB: A Deep Learning Approach for Predicting Protein-RNA Binding☆13Updated 6 years ago
- "Representation Learning of Genomic Sequence Motifs with Convolutional Neural Networks" by Peter K. Koo and Sean R. Eddy☆33Updated 5 years ago
- GraphProt: modelling binding preferences of RNA-binding proteins☆21Updated 6 years ago
- Mutation effects predicted from sequence co-variation☆66Updated 7 years ago
- Decoding the functional networks of non-model organisms☆11Updated last month
- ScanFold is an RNA sequence scanning pipeline which attempts to identify potentially functional RNA secondary structures. This is done by…☆19Updated 2 years ago
- a framework for predicting global protein-protein interaction networks from dynamic mass spec data☆24Updated last year
- ☆58Updated 8 years ago