🧛 Deep generative models for TCR sequences 🧛
☆17Apr 4, 2022Updated 4 years ago
Alternatives and similar repositories for vampire
Users that are interested in vampire are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆22Jun 10, 2024Updated 2 years ago
- ☆17Jun 24, 2021Updated 5 years ago
- B- and T-cell receptor sequence annotation, simulation, clonal family and germline inference, and affinity prediction☆65Updated this week
- ☆20Feb 25, 2025Updated last year
- Analysis tools for PhIP-seq experiments☆13Jan 24, 2022Updated 4 years ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- predicting peptide and TCR interaction☆19Jan 27, 2021Updated 5 years ago
- Deciphering protein evolution and fitness landscapes with latent space models☆38Nov 2, 2021Updated 4 years ago
- ☆32Dec 17, 2019Updated 6 years ago
- immuneML is a platform for machine learning analysis of adaptive immune receptor repertoire data.☆76Oct 5, 2026Updated last week
- Predicting immunogenic peptide recognized by TCR through ensemble deep learning☆18Apr 22, 2024Updated 2 years ago
- Quantifying the nativeness of antibody sequences using long short-term memory networks☆18Dec 17, 2021Updated 4 years ago
- Peptide library design☆23Sep 8, 2020Updated 6 years ago
- 📝 [Tutorial] RepSeq data mining basics in R☆10Mar 13, 2019Updated 7 years ago
- Alignment-free method to identify and analyse discriminant genomic subsequences within pathogen sequences☆10Feb 26, 2023Updated 3 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Jupyter notebooks from our weekly (or so) hackathons☆11Dec 3, 2024Updated last year
- Scripts for NGS processing☆16Sep 6, 2017Updated 9 years ago
- Compute generation probabilities of CDR3 amino acid and nucleotide sequences☆70Nov 18, 2025Updated 10 months ago
- Deep Exploration Networks - Diverse Deep Generative Models for DNA, RNA and Protein Sequences☆31Oct 1, 2021Updated 5 years ago
- The backend engine for the Chap Modeling Platform☆21Updated this week
- Large language modeling applied to T-cell receptor (TCR) sequences.☆61May 4, 2022Updated 4 years ago
- ☆12Mar 12, 2026Updated 7 months ago
- 2018 RDKit UGM☆14Sep 28, 2018Updated 8 years ago
- Statistical classifier for immune repertoires☆45Oct 2, 2022Updated 4 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Reproducibility Repo for mvTCR paper☆14Apr 2, 2024Updated 2 years ago
- Search public databases for given genotypic information☆12Mar 21, 2018Updated 8 years ago
- Amino acid embedding and Convolutional Neural Network for HLA Class I-peptide binding prediction☆27Aug 3, 2017Updated 9 years ago
- Python package to plot sequence logos☆29Sep 21, 2023Updated 3 years ago
- Tools for processing immunosequencing data☆11Apr 9, 2026Updated 6 months ago
- An interactive browser for the VDJdb database☆16Oct 2, 2026Updated last week
- We introduce a differentiable approach to phylogenetic tree construction, optimizing tree and ancestral sequences in its original represe…☆21Apr 2, 2026Updated 6 months ago
- A tool to examine duplicate read characteristics in a BAM file☆12Dec 8, 2017Updated 8 years ago
- Predicting T Cell Receptor Specificity with Deep Learning☆10Jul 17, 2019Updated 7 years ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- FREE Divergence Error-Correcting DNA Barcodes☆10Jun 23, 2018Updated 8 years ago
- This repository is for the paper "A generative nonparametric Bayesian model for whole genomes"☆16Jun 7, 2023Updated 3 years ago
- Code for "Optimizing 5’UTRs for mRNA-delivered gene editing using deep learning"☆25Jul 2, 2024Updated 2 years ago
- pygor3 repository☆10Nov 20, 2025Updated 10 months ago
- HyLight is a strain aware de novo assembly method based on the overlap-layout-consensus (OLC) paradigm that leverages the strengths of NG…☆12Sep 18, 2024Updated 2 years ago
- Pan-cancer quantification of neoantigen-mediated immunoediting in cancer evolution☆14May 4, 2022Updated 4 years ago
- Developing efficient Bayesian phylogenetic inference methods☆12Dec 21, 2019Updated 6 years ago