π§ Deep generative models for TCR sequences π§
β17Apr 4, 2022Updated 3 years ago
Alternatives and similar repositories for vampire
Users that are interested in vampire are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Code and Data for Generative modeling for AAV designβ10Nov 13, 2023Updated 2 years ago
- ERGO is a deep learing based model for predicting TCR-peptide binding.β19Aug 26, 2020Updated 5 years ago
- Deep Learning Method to Identify Cancer Associated TCRsβ46Aug 2, 2022Updated 3 years ago
- β27Dec 17, 2019Updated 6 years ago
- Infer selection pressures on features of amino acid CDR3 sequences.β25Apr 17, 2024Updated last year
- 1-Click AI Models by DigitalOcean Gradient β’ AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click and start building anything your business needs.
- β17Jun 24, 2021Updated 4 years ago
- β20Jun 10, 2024Updated last year
- Fast and Efficient Tool to Simulate Summary Statistics from Genome-Wide Association Studiesβ12May 21, 2024Updated last year
- B- and T-cell receptor sequence annotation, simulation, clonal family and germline inference, and affinity predictionβ62Updated this week
- predicting peptide and TCR interactionβ20Jan 27, 2021Updated 5 years ago
- The backend engine for the Chap Modeling Platformβ21Updated this week
- Deciphering protein evolution and fitness landscapes with latent space modelsβ37Nov 2, 2021Updated 4 years ago
- β20Feb 25, 2025Updated last year
- Analysis tools for PhIP-seq experimentsβ12Jan 24, 2022Updated 4 years ago
- Managed Kubernetes at scale on DigitalOcean β’ AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Predicting immunogenic peptide recognized by TCR through ensemble deep learningβ17Apr 22, 2024Updated last year
- immuneML is a platform for machine learning analysis of adaptive immune receptor repertoire data.β74Mar 15, 2026Updated last week
- A framework and specification language for simulating data based on graphical modelsβ19May 2, 2025Updated 10 months ago
- Quantifying the nativeness of antibody sequences using long short-term memory networksβ18Dec 17, 2021Updated 4 years ago
- Compute generation probabilities of CDR3 amino acid and nucleotide sequencesβ64Nov 18, 2025Updated 4 months ago
- Peptide library designβ23Sep 8, 2020Updated 5 years ago
- Scripts for NGS processingβ17Sep 6, 2017Updated 8 years ago
- Deep Exploration Networks - Diverse Deep Generative Models for DNA, RNA and Protein Sequencesβ31Oct 1, 2021Updated 4 years ago
- Large language modeling applied to T-cell receptor (TCR) sequences.β59May 4, 2022Updated 3 years ago
- 1-Click AI Models by DigitalOcean Gradient β’ AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click and start building anything your business needs.
- 2018 RDKit UGMβ14Sep 28, 2018Updated 7 years ago
- π An interactive browser for the VDJdb databaseβ15Updated this week
- β11Mar 12, 2026Updated 2 weeks ago
- π [Tutorial] RepSeq data mining basics in Rβ11Mar 13, 2019Updated 7 years ago
- Reproducibility Repo for mvTCR paperβ13Apr 2, 2024Updated last year
- Temporal Pathway Synthesizerβ17Jun 28, 2024Updated last year
- Search public databases for given genotypic informationβ11Mar 21, 2018Updated 8 years ago
- Statistical classifier for immune repertoiresβ46Oct 2, 2022Updated 3 years ago
- Python package to plot sequence logosβ29Sep 21, 2023Updated 2 years ago
- Managed Kubernetes at scale on DigitalOcean β’ AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- We introduce a differentiable approach to phylogenetic tree construction, optimizing tree and ancestral sequences in its original represeβ¦β20Mar 4, 2026Updated 3 weeks ago
- Code for "Optimizing 5βUTRs for mRNA-delivered gene editing using deep learning"β24Jul 2, 2024Updated last year
- A tool to examine duplicate read characteristics in a BAM fileβ12Dec 8, 2017Updated 8 years ago
- A utility package for providing SVG export to DiagrammeR graph diagramsβ30Jul 7, 2021Updated 4 years ago
- Predicting T Cell Receptor Specificity with DeepΒ Learningβ10Jul 17, 2019Updated 6 years ago
- FREE Divergence Error-Correcting DNA Barcodesβ10Jun 23, 2018Updated 7 years ago
- This repository is for the paper "A generative nonparametric Bayesian model for whole genomes"β15Jun 7, 2023Updated 2 years ago