🧛 Deep generative models for TCR sequences 🧛
☆17Apr 4, 2022Updated 3 years ago
Alternatives and similar repositories for vampire
Users that are interested in vampire are comparing it to the libraries listed below
Sorting:
- Code and Data for Generative modeling for AAV design☆10Nov 13, 2023Updated 2 years ago
- ERGO is a deep learing based model for predicting TCR-peptide binding.☆19Aug 26, 2020Updated 5 years ago
- ☆27Dec 17, 2019Updated 6 years ago
- Open Targets Genetics UI☆15Jan 31, 2025Updated last year
- A tool to examine duplicate read characteristics in a BAM file☆12Dec 8, 2017Updated 8 years ago
- Deep Learning Method to Identify Cancer Associated TCRs☆46Aug 2, 2022Updated 3 years ago
- Altered TCR Ligand Affinities and Structures☆12Dec 1, 2023Updated 2 years ago
- Search public databases for given genotypic information☆11Mar 21, 2018Updated 7 years ago
- Temporal Pathway Synthesizer☆17Jun 28, 2024Updated last year
- the we-flyin WFA-guided ultralong tiling sequence aligner☆10May 13, 2021Updated 4 years ago
- MEM mapper prototype☆13Nov 28, 2020Updated 5 years ago
- Analysis tools for PhIP-seq experiments☆12Jan 24, 2022Updated 4 years ago
- Python package to plot sequence logos☆29Sep 21, 2023Updated 2 years ago
- IMSEQ - IMmunogenetic SEQuence Analysis☆15Aug 10, 2018Updated 7 years ago
- Python for HLA analysis: summary, association analysis, zygosity test and interaction test☆38Jul 24, 2024Updated last year
- Deciphering protein evolution and fitness landscapes with latent space models☆37Nov 2, 2021Updated 4 years ago
- ☆20Feb 25, 2025Updated last year
- 2018 RDKit UGM☆14Sep 28, 2018Updated 7 years ago
- ☆17Jun 24, 2021Updated 4 years ago
- Predicting immunogenic peptide recognized by TCR through ensemble deep learning☆17Apr 22, 2024Updated last year
- Visually explore covariation in protein families☆40Dec 8, 2019Updated 6 years ago
- Gitools, is a framework for analysis and visualization of genomic data. Data and results are represented as browsable heatmaps. Gitools a…☆28Dec 5, 2022Updated 3 years ago
- Quantifying the nativeness of antibody sequences using long short-term memory networks☆18Dec 17, 2021Updated 4 years ago
- ERGO is a deep learing based model for predicting TCR-peptide binding.☆18Aug 18, 2022Updated 3 years ago
- ☆20Jun 10, 2024Updated last year
- predicting peptide and TCR interaction☆20Jan 27, 2021Updated 5 years ago
- StrVCTVRE, a structural variant classifier for exonic deletions and duplications☆19Dec 6, 2023Updated 2 years ago
- Integrated Variant Caller☆17Mar 15, 2018Updated 7 years ago
- Tools to process LIANTI sequence data☆23Feb 20, 2019Updated 7 years ago
- We introduce a differentiable approach to phylogenetic tree construction, optimizing tree and ancestral sequences in its original represe…☆20Nov 27, 2023Updated 2 years ago
- C++ library for analysing and storing large-scale cohorts of sequence variant data☆17Aug 27, 2019Updated 6 years ago
- A simple JavaScript API for Vega-Lite.☆38Sep 4, 2019Updated 6 years ago
- A Python package for jointly analyzing multimodal single-cell sequencing data☆26Jan 17, 2025Updated last year
- myVCF: a web-based platform for target and exome mutations data management☆21Apr 13, 2021Updated 4 years ago
- Code for "Optimizing 5’UTRs for mRNA-delivered gene editing using deep learning"☆24Jul 2, 2024Updated last year
- A small repo for storing the code for making the files and html for CCRs.☆22Oct 22, 2019Updated 6 years ago
- High-level API for storing and querying sequence variant data☆20May 24, 2019Updated 6 years ago
- Fast phenograph, CyTOF☆26Aug 19, 2022Updated 3 years ago
- Variant Call Format (VCF) parser☆26Updated this week