Alternatives and similar repositories for TCRAI:

Users that are interested in TCRAI are comparing it to the libraries listed below

• IdoSpringer / ERGO-II
  ERGO-II, an updated version of ERGO including more features for TCR-peptide binding prediction
  ☆29Updated 2 years ago
• kmayerb / tcrdist3
  flexible CDR based distance metrics
  ☆57Updated 5 months ago
• emmijokinen / TCRGP
  TCRGP, a novel Gaussian process method that can predict if TCRs recognize certain epitopes. This method can utilize different CDR sequenc…
  ☆28Updated 2 years ago
• mnielLab / netTCR
  predicting peptide and TCR interaction
  ☆20Updated 4 years ago
• mnielLab / NetTCR-2.0
  NetTCR-2.0. Sequence-based prediction of peptide-TCR binding
  ☆33Updated 2 years ago
• emmijokinen / TCRconv
  TCRconv is a deep learning model for predicting recognition between T cell receptors and epitopes. It uses protBERT embeddings for the TC…
  ☆23Updated 2 years ago
• GfellerLab / MixMHC2pred
  HLA-II ligand predictor.
  ☆38Updated last year
• theislab / tcellmatch
  ☆37Updated 4 years ago
• tianshilu / pMTnet
  Deep Learning the T Cell Receptor Binding Specificity of Neoantigen
  ☆78Updated 2 years ago
• antigenomics / tcr-annotation-methodology
  📝 [Paper/Tutorial] T-cell repertoire annotation and motif discovery
  ☆13Updated 4 years ago
• GreiffLab / immuneSIM
  ☆37Updated last year
• antigenomics / tcren-ms
  📝 [Paper] TCRen: predicting TCR-peptide recognition based on residue-level pairwise statistical potential
  ☆15Updated 3 weeks ago
• Teichlab / drug2cell
  Gene group activity utility functions for Scanpy
  ☆67Updated last month
• uio-bmi / immuneML
  immuneML is a platform for machine learning analysis of adaptive immune receptor repertoire data.
  ☆64Updated this week
• Genentech / Absolve
  Absolve antibody variable domain sequence analysis
  ☆16Updated 6 years ago
• SchubertLab / mvTCR
  ☆49Updated 2 months ago
• s175573 / DeepCAT
  Deep Learning Method to Identify Cancer Associated TCRs
  ☆45Updated 2 years ago
• epigen / KPNN
  Knowledge-primed neural networks
  ☆35Updated last year
• chenhcs / FRoGS
  Functional Embedding of Gene Signatures
  ☆39Updated 11 months ago
• cole-trapnell-lab / sci-plex
  repository containing analysis scripts and auxiliary files
  ☆30Updated 4 years ago
• immunogenomics / TiRP
  code repository for Lagattuta et al. "Repertoire analyses reveal T cell receptor sequence features that influence T cell fate." Nat. Imm.…
  ☆12Updated this week
• pmoris / ImRex
  Generic TCR-epitope recognition prediction using CNN approach on both known and novel epitopes
  ☆15Updated last year
• lanagarmire / Asgard
  ☆41Updated last year
• decomverse / ACTIONet
  ACTIONet single-cell analysis framework
  ☆37Updated 4 months ago
• theislab / scgen-reproducibility
  ☆24Updated 4 years ago
• alexyermanos / Platypus
  R package for the analysis of single-cell immune repertoires
  ☆41Updated last month
• sidhomj / DeepTCR
  Deep Learning Methods for Parsing T-Cell Receptor Sequencing (TCRSeq) Data
  ☆115Updated last year
• altoslabs / perturbench
  ☆22Updated 3 weeks ago
• antigenomics / vdjmatch
  ⚙️ Matching T-cell repertoire against a database of TCR antigen specificities
  ☆38Updated 6 years ago
• phbradley / tcr-dist
  Software tools for the analysis of epitope-specific T cell receptor (TCR) repertoires (scroll down for the README)
  ☆79Updated 3 years ago