GuoBioinfoLab / CATTLinks
An ultra-sensitive and precise tool for characterizing T cell CDR3 sequences in TCR-seq and RNA-seq data.
☆21Updated last year
Alternatives and similar repositories for CATT
Users that are interested in CATT are comparing it to the libraries listed below
Sorting:
- ☆48Updated 2 years ago
- ⚙️ Matching T-cell repertoire against a database of TCR antigen specificities☆38Updated 6 years ago
- Model-based Analysis of Genome-wide CRISPR-Cas9 Knockout (MAGeCK) is a computational tool to identify important genes from the recent gen…☆30Updated 4 years ago
- In-silico method written in Python and R to determine HLA genotypes of a sample. seq2HLA takes standard RNA-Seq sequence reads in fastq f…☆49Updated last year
- Integrative analysis pipeline for pooled CRISPR functional genetic screens☆30Updated last year
- Code related to the Celligner manuscript☆46Updated 4 years ago
- The R Bioconductor package for scMAGeCK.☆13Updated last year
- Find circRNAs in RNA-seq data.☆14Updated 8 years ago
- ☆37Updated 2 years ago
- ☆57Updated 4 years ago
- ☆64Updated last year
- A statistical tool to detect differential alternative splicing events using single-cell RNA-seq☆22Updated last year
- Public repository containing research code for the TCGA PanCanAtlas Splicing project☆41Updated 4 years ago
- A computational workflow for exitron splicing identification☆12Updated 9 months ago
- Capturing protein-RNA interaction footprints from single-nucleotide CLIP-seq data☆31Updated 3 years ago
- ☆34Updated 6 years ago
- A comprehensive, accurate and efficient solution for analysis of large scale base-resolution DNA methylation data☆17Updated 4 years ago
- CLIP-seq Analysis of Multi-mapped reads☆30Updated 3 years ago
- a toolset for mining multi-dimensional features of the translatome with ribosome profiling data☆18Updated 5 months ago
- A comprehensive tool for processing, analyzing and visulizing single cell chromatin accessibility sequencing data☆24Updated 9 months ago
- R implementation of GLIPH (Grouping of Lymphocyte Interactions by Paratope Hotspots), an algorithm developed by Glanville et al to identi…☆21Updated 2 years ago
- ☆38Updated 5 years ago
- Identifying genome-wide translated open reading frames using ribosome profiling☆23Updated 2 years ago
- ☆18Updated 3 years ago
- Genomic Identification of Significant Targets in Cancer (GISTIC), version 2☆51Updated 3 years ago
- A list of alternative splicing analysis resources☆44Updated 3 months ago
- Estimate locus specific human LINE-1 expression.☆35Updated 2 years ago
- Grouping of Lymphocyte Interactions by Paratope Hotspots☆93Updated 4 years ago
- ☆28Updated 8 months ago
- Tools which deal with multiple single cell measurements☆23Updated last week