GuoBioinfoLab / CATTLinks
An ultra-sensitive and precise tool for characterizing T cell CDR3 sequences in TCR-seq and RNA-seq data.
☆21Updated last year
Alternatives and similar repositories for CATT
Users that are interested in CATT are comparing it to the libraries listed below
Sorting:
- ⚙️ Matching T-cell repertoire against a database of TCR antigen specificities☆38Updated 6 years ago
- ☆48Updated 2 years ago
- In-silico method written in Python and R to determine HLA genotypes of a sample. seq2HLA takes standard RNA-Seq sequence reads in fastq f…☆49Updated last year
- Epimap processing and analysis code repository☆33Updated 2 years ago
- Public repository containing research code for the TCGA PanCanAtlas Splicing project☆41Updated 4 years ago
- Notes on ChIP-seq and other-seq-related tools☆26Updated 4 months ago
- Code and additional processed data for manuscript "Tumor and Microenvironment Evolution during Immunotherapy with Nivolumab"; see for man…☆51Updated 7 years ago
- CLIP-seq Analysis of Multi-mapped reads☆30Updated 3 years ago
- R implementation of GLIPH (Grouping of Lymphocyte Interactions by Paratope Hotspots), an algorithm developed by Glanville et al to identi…☆20Updated 2 years ago
- Bostongene cell deconvolution algorithm from RNAseq☆53Updated last year
- A comprehensive tool for processing, analyzing and visulizing single cell chromatin accessibility sequencing data☆24Updated 8 months ago
- Bulk-Sequence Single-Cell Gene Expression Deconvolution Pipeline☆45Updated last year
- Genome-wide assessment of differential translations with ribosome profiling data☆19Updated 3 weeks ago
- R package for the analysis of single-cell immune repertoires☆42Updated 3 months ago
- Analysis pipeline for the GUIDE-seq assay.☆25Updated 3 weeks ago
- Using TCR and expression for sequence embedding☆54Updated 4 months ago
- ☆38Updated 5 years ago
- ☆37Updated 2 years ago
- ☆80Updated last year
- simplified cellranger for long-read data☆19Updated last month
- ☆59Updated 9 months ago
- ☆55Updated 7 years ago
- Code related to the Celligner manuscript☆46Updated 4 years ago
- ☆34Updated 5 years ago
- Identifying genome-wide translated open reading frames using ribosome profiling☆23Updated 2 years ago
- Integrative analysis pipeline for pooled CRISPR functional genetic screens☆30Updated last year
- Data of genome annotation from full-stack ChromHMM model trained with 1032 datasets from 127 reference epigenomes☆36Updated 10 months ago
- This is the package of Yuanfang's winning algorithm in the ENCODE-DREAM in vivo Transcription Factor Binding Site Prediction Challenge☆20Updated 4 years ago
- ☆57Updated 4 years ago
- Decombinator v5: fast, error-correcting analysis of TCR repertoires☆25Updated last week