An ultra-sensitive and precise tool for characterizing T cell CDR3 sequences in TCR-seq and RNA-seq data.
☆21Nov 19, 2025Updated 4 months ago
Alternatives and similar repositories for CATT
Users that are interested in CATT are comparing it to the libraries listed below
Sorting:
- ⚙️ Matching T-cell repertoire against a database of TCR antigen specificities☆39Feb 23, 2026Updated 3 weeks ago
- predicting peptide and TCR interaction☆20Jan 27, 2021Updated 5 years ago
- ☆17Jun 24, 2021Updated 4 years ago
- ☆41Aug 18, 2020Updated 5 years ago
- A RepSeq processing swiss-knife☆42Mar 29, 2024Updated last year
- T cell Receptor and B cell Receptor assembly from single cell RNA sequencing data☆10Aug 27, 2017Updated 8 years ago
- NetTCR-2.0. Sequence-based prediction of peptide-TCR binding☆36Mar 29, 2022Updated 3 years ago
- Automated human exome/genome variants detection from FASTQ files☆23Sep 27, 2021Updated 4 years ago
- A pipeline for complete and accurate recovery of TCR repertoires from high throughput sequencing data.☆23Sep 10, 2023Updated 2 years ago
- convert a blast output to a bed file☆12Jun 19, 2015Updated 10 years ago
- ☆10Sep 14, 2023Updated 2 years ago
- VGEA (Viral Genomes Easily Analyzed) is a pipeline for analysis of RNA virus next-generation sequencing data.☆20Sep 12, 2021Updated 4 years ago
- ☆10Jun 29, 2021Updated 4 years ago
- Analyses for Manuscript "Sensitive detection of renal cell carcinoma using plasma and urine cell-free DNA methylomes"☆12Aug 4, 2020Updated 5 years ago
- TCR and BCR assembly from RNA-seq data☆343Updated this week
- MiXCR is an ultimate software platform for analysis of Next-Generation Sequencing (NGS) data for immune profiling.☆383Mar 12, 2026Updated last week
- Code for "T Cell Receptor Specificity Prediction with Bimodal Attention Networks" (https://doi.org/10.1093/bioinformatics/btab294, ISMB 2…☆30Jul 12, 2025Updated 8 months ago
- ☆38Nov 27, 2023Updated 2 years ago
- Tools for processing immunosequencing data☆11Jun 15, 2025Updated 9 months ago
- ERGO is a deep learing based model for predicting TCR-peptide binding.☆19Aug 26, 2020Updated 5 years ago
- CDR3 clustering module providing a new method for fast and accurate clustering of large data sets of CDR3 amino acid sequences, and offer…☆55Apr 3, 2024Updated last year
- Software tools for the analysis of epitope-specific T cell receptor (TCR) repertoires (scroll down for the README)☆87Oct 6, 2021Updated 4 years ago
- Deep Learning Methods for Parsing T-Cell Receptor Sequencing (TCRSeq) Data☆122Sep 16, 2025Updated 6 months ago
- This script use to analyze the immune repertoire sequenced by high throughtput sequencing☆27Dec 16, 2021Updated 4 years ago
- 🧬 immunarch [R package] – Multi-Modal Immune Repertoire Analytics for Immunotherapy and Vaccine Design☆338Nov 18, 2025Updated 4 months ago
- Summary statistics for repertoires☆17Feb 1, 2023Updated 3 years ago
- VDJ assignment and antibody sequence annotation. Scalable from a single sequence to billions of sequences.☆44Feb 22, 2026Updated 3 weeks ago
- ☆15Feb 28, 2022Updated 4 years ago
- Large language modeling applied to T-cell receptor (TCR) sequences.☆59May 4, 2022Updated 3 years ago
- Deep Learning the T Cell Receptor Binding Specificity of Neoantigen☆90Jun 14, 2022Updated 3 years ago
- Grouping of Lymphocyte Interactions by Paratope Hotspots☆96Dec 4, 2020Updated 5 years ago
- HTS-compatible wrapper for IgBlast V-(D)-J mapping tool☆54Oct 29, 2024Updated last year
- The single T cell annotation tool for scRNA-seq data☆25Apr 25, 2025Updated 10 months ago
- ERGO-II, an updated version of ERGO including more features for TCR-peptide binding prediction☆34Apr 1, 2022Updated 3 years ago
- Immunoglobulin and T-Cell receptor rearrangement software☆50Jan 9, 2026Updated 2 months ago
- your friendly pangenome graph genotyper☆10Feb 6, 2023Updated 3 years ago
- Variant call adjudication☆16Jun 13, 2024Updated last year
- Comparative evaluation of different methods for TCR clustering☆12Aug 28, 2018Updated 7 years ago
- Single-cell analytic toolbox that offers modular workflows for multi-level cellular annotation and user-friendly analysis reports☆11May 25, 2023Updated 2 years ago