Alternatives and similar repositories for CATT:

Users that are interested in CATT are comparing it to the libraries listed below

• antigenomics / vdjmatch
  ⚙️ Matching T-cell repertoire against a database of TCR antigen specificities
  ☆38Updated 6 years ago
• angelettilab / scMouseBcellFlu
  ☆18Updated 3 years ago
• cboix / EPIMAP_ANALYSIS
  Epimap processing and analysis code repository
  ☆33Updated 2 years ago
• andrewrech / antigen.garnish
  ☆47Updated 2 years ago
• Xinglab / CLAM
  CLIP-seq Analysis of Multi-mapped reads
  ☆29Updated 3 years ago
• ratschlab / pancanatlas_code_public
  Public repository containing research code for the TCGA PanCanAtlas Splicing project
  ☆41Updated 4 years ago
• aertslab / GENIE3
  GENIE3 (GEne Network Inference with Ensemble of trees) R-package
  ☆30Updated 2 years ago
• riazn / bms038_analysis
  Code and additional processed data for manuscript "Tumor and Microenvironment Evolution during Immunotherapy with Nivolumab"; see for man…
  ☆51Updated 7 years ago
• alexyermanos / Platypus
  R package for the analysis of single-cell immune repertoires
  ☆42Updated 2 weeks ago
• nghiavtr / SCmut
  ☆31Updated 5 years ago
• tanlabcode / scATAC-pro
  A comprehensive tool for processing, analyzing and visulizing single cell chromatin accessibility sequencing data
  ☆24Updated 4 months ago
• PierreBSC / Viral-Track
  ☆57Updated 4 years ago
• sklasfeld / DANPOS3
  Updated DANPOS2 to work with python3
  ☆21Updated 11 months ago
• GuanLab / Anchor
  This is the package of Yuanfang's winning algorithm in the ENCODE-DREAM in vivo Transcription Factor Binding Site Prediction Challenge
  ☆20Updated 4 years ago
• mhorlbeck / ScreenProcessing
  ☆64Updated last year
• BorchLab / Trex
  Using TCR and expression for sequence embedding
  ☆51Updated 2 weeks ago
• liulab-dfci / MAGeCK
  Model-based Analysis of Genome-wide CRISPR-Cas9 Knockout (MAGeCK) is a computational tool to identify important genes from the recent gen…
  ☆27Updated 4 years ago
• McGranahanLab / TcellExTRECT
  ☆47Updated last month
• XiDsLab / scFusion
  ☆20Updated 2 years ago
• xryanglab / xtail
  Genome-wide assessment of differential translations with ribosome profiling data
  ☆19Updated 2 years ago
• velocyto-team / velocyto-notebooks
  ☆55Updated 6 years ago
• cole-trapnell-lab / cicero-release
  ☆57Updated 5 months ago
• chung-lab / SCAFE
  Single Cell Analysis of Five'Ends
  ☆47Updated 11 months ago
• broadinstitute / Celligner_ms
  Code related to the Celligner manuscript
  ☆45Updated 4 years ago
• sridnona / cb_sniffer
  mutation(barcode) caller for 10x single cell data
  ☆44Updated 4 years ago
• shenorrLabTRDF / bseqsc
  Bulk-Sequence Single-Cell Gene Expression Deconvolution Pipeline
  ☆44Updated last year
• ggjlab / scHCL
  ☆48Updated 4 years ago
• Teichlab / bracer
  BraCeR - reconstruction of B cell receptor sequences from single-cell RNAseq data
  ☆42Updated 5 months ago
• jcao89757 / TESSA
  Mapping the Functional Landscape of TCR Repertoire
  ☆34Updated 3 years ago
• kmayerb / tcrdist3
  flexible CDR based distance metrics
  ☆57Updated 6 months ago