whhudson / spatialTCRLinks
☆13Updated 3 years ago
Alternatives and similar repositories for spatialTCR
Users that are interested in spatialTCR are comparing it to the libraries listed below
Sorting:
- Code to reproduce the analysis of "Decoding gene regulation in the mouse embryo using single-cell multi-omics""☆40Updated 3 years ago
- User-friendly tool to infer cell-cell interactions and communication from gene expression of interacting proteins☆67Updated last week
- Python implementation of Milo for differential abundance testing on KNN graph☆74Updated 8 months ago
- pycisTopic is a Python module to simultaneously identify cell states and cis-regulatory topics from single cell epigenomics data.☆77Updated 2 months ago
- Single-Cell Analysis of Inter-Individual Variability by Interpretable Tensor Decomposition☆63Updated last year
- Single-cell Lung Cancer Atlas with 1.2M cells☆79Updated 9 months ago
- ☆59Updated last year
- A tool for semi-automatic cell type harmonization and integration☆115Updated last week
- ☆83Updated this week
- Single cell omics biology annotations☆50Updated 6 months ago
- ST Pipeline contains the tools and scripts needed to process and analyze the raw files generated with the Spatial Transcriptomics method …☆88Updated 8 months ago
- This repository contains all code used for the Human Lung Cell Atlas project.☆56Updated 2 years ago
- Inferring allele-specific copy number aberrations and tumor phylogeography from spatially resolved transcriptomics☆41Updated 2 months ago
- Python package for analysis of multiomic single cell RNA-seq and ATAC-seq.☆66Updated 4 months ago
- Single-Cell Clustering Assessment Framework☆106Updated 2 years ago
- Spatial Transcriptomics Algorithm Reconstructing Copy-number Heterogeneity☆28Updated last year
- Gene group activity utility functions for Scanpy☆95Updated 10 months ago
- ☆59Updated 4 months ago
- Inference of RNA velocity modules for prediction of cell fates and integration with spatial and regulatory models.☆81Updated 7 months ago
- Principal analysis code used in for analysis of single cell RNAseq of primary untreated colon cancer. As described in: "Spatially organiz…☆38Updated 4 years ago
- Context specific and dynamic gene regulatory network reconstruction and analysis☆122Updated last month
- PhyloVelo, Phylogeny-based transcriptomic velocity of single cells☆43Updated last month
- Clone Calling from Visium Spatial Transcriptomics of Cancer samples☆83Updated 2 years ago
- Aligning gene expression trajectories of single-cell reference and query systems☆76Updated 3 months ago
- Direct estimation of mean and covariance from single cell RNA seq experiments☆121Updated 6 months ago
- Analysis of cell-cell communication at single-cell resolution☆105Updated last year
- TACCO: Transfer of Annotations to Cells and their COmbinations☆61Updated 2 months ago
- ☆126Updated 3 years ago
- ☆55Updated last year
- Publication Page for MPAL Paper 2019☆83Updated 5 years ago