☆14Mar 18, 2022Updated 4 years ago
Alternatives and similar repositories for spatialTCR
Users that are interested in spatialTCR are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆20Dec 9, 2021Updated 4 years ago
- ☆14Feb 17, 2022Updated 4 years ago
- TCRGP, a novel Gaussian process method that can predict if TCRs recognize certain epitopes. This method can utilize different CDR sequenc…☆30Jan 31, 2023Updated 3 years ago
- ☆22Aug 2, 2023Updated 2 years ago
- simplified cellranger for long-read data☆21Aug 27, 2025Updated 10 months ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- imNet: a Sequence Network Construction Toolkit☆20Jul 7, 2020Updated 6 years ago
- Single-cell Graph Cuts Optimization☆16Apr 27, 2024Updated 2 years ago
- High-throughput mapping and domain partitioning of antigen receptor sequences☆55Updated this week
- This repository contains a QSAR model that predicts the ability of a chemical compound to inhibit the gene associated with Alzheimer's, B…☆11Oct 1, 2021Updated 4 years ago
- Automate unsupervised machine learning cell type identification using both protein expressions and cell spatial neighborhood information …☆41May 7, 2024Updated 2 years ago
- ☆19Updated this week
- a tool for annotation of immunoglobulin genes in genome assemblies☆15Sep 22, 2025Updated 9 months ago
- RAGE-seq scripts☆18Aug 30, 2021Updated 4 years ago
- Reproduce analyses in Harmony Manuscript☆11Feb 21, 2020Updated 6 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- STARTRAC(Single T-cell Analysis by Rna-seq and Tcr TRACking)☆124Apr 26, 2025Updated last year
- Predicting TCR:pMHC binding from structural data☆27Updated this week
- R/Bioconductor package to interactively explore single cell clusters at multiple resolutions☆11Mar 10, 2022Updated 4 years ago
- ☆14Oct 11, 2019Updated 6 years ago
- ☆39Apr 21, 2026Updated 3 months ago
- An extension class of SummarizedExperiment to allow hierarchical structure on the row or column dimension☆14Jul 22, 2025Updated 11 months ago
- COMUNET: a tool to explore and visualize intercellular communication☆12Apr 15, 2020Updated 6 years ago
- A statistical simulator for rational scRNA-seq experimental design☆13Dec 14, 2020Updated 5 years ago
- Repository detailing updated allowlisting and clonal analysis workflow☆11Feb 1, 2025Updated last year
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- R package to BLAST peptide sequences against each other and identify the minimal overlap of aligning regions.☆17Aug 26, 2025Updated 10 months ago
- ☆10Oct 15, 2025Updated 9 months ago
- ☆11Feb 18, 2019Updated 7 years ago
- ☆10Sep 27, 2022Updated 3 years ago
- Supporting data files and code for the publication by Shilts et al.☆31Aug 28, 2022Updated 3 years ago
- ☆15Aug 6, 2020Updated 5 years ago
- ☆12Apr 13, 2020Updated 6 years ago
- Spatial Tumor Microenvironment (SpatialTME) database is a comprehensive database designed for characterize tumor spatial microenvironment…☆13Dec 4, 2023Updated 2 years ago
- A workshop on microbiome analysis using Bioconductor☆16Jun 20, 2019Updated 7 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Grouping of Lymphocyte Interactions by Paratope Hotspots☆95Dec 4, 2020Updated 5 years ago
- 🦠 A tool for identifying and analyzing functions in microbial genomes.☆16Sep 25, 2024Updated last year
- ABSOLUTE source code that works with allelic copy ratio on both hg19 and hg38☆16Nov 5, 2025Updated 8 months ago
- ☆12Sep 7, 2023Updated 2 years ago
- GCtree: phylogenetic inference of genotype-collapsed trees☆18Aug 27, 2024Updated last year
- Pipeline for demultiplexing and aligning both ATAC and RNA data generated in SHARE-seqV2☆17Apr 21, 2023Updated 3 years ago
- Lineage Tracing by Integrating Mutation and Transcriptomic data☆13Jun 16, 2020Updated 6 years ago