whhudson / spatialTCRLinks
☆14Updated 3 years ago
Alternatives and similar repositories for spatialTCR
Users that are interested in spatialTCR are comparing it to the libraries listed below
Sorting:
- pycisTopic is a Python module to simultaneously identify cell states and cis-regulatory topics from single cell epigenomics data.☆79Updated this week
- Python implementation of Milo for differential abundance testing on KNN graph☆81Updated 11 months ago
- TACCO: Transfer of Annotations to Cells and their COmbinations☆62Updated 5 months ago
- Single-Cell Analysis of Inter-Individual Variability by Interpretable Tensor Decomposition☆62Updated last year
- ST Pipeline contains the tools and scripts needed to process and analyze the raw files generated with the Spatial Transcriptomics method …☆88Updated last week
- Code to reproduce the analysis of "Decoding gene regulation in the mouse embryo using single-cell multi-omics""☆40Updated 3 years ago
- Inference of RNA velocity modules for prediction of cell fates and integration with spatial and regulatory models.☆84Updated 10 months ago
- User-friendly tool to infer cell-cell interactions and communication from gene expression of interacting proteins☆69Updated 3 months ago
- Inferring allele-specific copy number aberrations and tumor phylogeography from spatially resolved transcriptomics☆46Updated 5 months ago
- Spatial Cellular Estimator for Tumors☆60Updated last month
- ☆87Updated last week
- This repository contains all code used for the Human Lung Cell Atlas project.☆58Updated 2 years ago
- ☆60Updated 3 weeks ago
- Direct estimation of mean and covariance from single cell RNA seq experiments☆127Updated 8 months ago
- Single-cell Lung Cancer Atlas with 1.2M cells☆87Updated last year
- A tool for semi-automatic cell type harmonization and integration☆117Updated 3 months ago
- ☆129Updated 3 years ago
- Clone Calling from Visium Spatial Transcriptomics of Cancer samples☆88Updated 3 years ago
- Principal analysis code used in for analysis of single cell RNAseq of primary untreated colon cancer. As described in: "Spatially organiz…☆40Updated 4 years ago
- trajectory inference☆105Updated last year
- ☆62Updated last month
- CytoSPACE: Optimal mapping of scRNA-seq data to spatial transcriptomics data☆138Updated 11 months ago
- ☆34Updated 3 months ago
- Aligning gene expression trajectories of single-cell reference and query systems☆80Updated 5 months ago
- Functional Inference of Gene Regulation☆51Updated last year
- Single-Cell Clustering Assessment Framework☆107Updated 2 years ago
- Spatial Transcriptomics Algorithm Reconstructing Copy-number Heterogeneity☆30Updated last year
- Predict RNA velocity through deep learning☆72Updated 2 years ago
- Metacells - Single-cell RNA Sequencing Analysis☆117Updated last year
- ☆25Updated 11 months ago