whhudson / spatialTCRLinks
☆13Updated 3 years ago
Alternatives and similar repositories for spatialTCR
Users that are interested in spatialTCR are comparing it to the libraries listed below
Sorting:
- Code to reproduce the analysis of "Decoding gene regulation in the mouse embryo using single-cell multi-omics""☆40Updated 3 years ago
- Inferring allele-specific copy number aberrations and tumor phylogeography from spatially resolved transcriptomics☆41Updated last month
- Spatial Transcriptomics Algorithm Reconstructing Copy-number Heterogeneity☆27Updated last year
- Python package for analysis of multiomic single cell RNA-seq and ATAC-seq.☆64Updated 2 months ago
- User-friendly tool to infer cell-cell interactions and communication from gene expression of interacting proteins☆65Updated 3 weeks ago
- Inference of RNA velocity modules for prediction of cell fates and integration with spatial and regulatory models.☆79Updated 6 months ago
- Single-Cell Analysis of Inter-Individual Variability by Interpretable Tensor Decomposition☆61Updated last year
- Single cell omics biology annotations☆51Updated 5 months ago
- ☆81Updated this week
- Single-Cell Clustering Assessment Framework☆105Updated last year
- Clone Calling from Visium Spatial Transcriptomics of Cancer samples☆80Updated 2 years ago
- pycisTopic is a Python module to simultaneously identify cell states and cis-regulatory topics from single cell epigenomics data.☆74Updated last week
- ☆31Updated 2 months ago
- Single-cell Lung Cancer Atlas with 1.2M cells☆68Updated 8 months ago
- TACCO: Transfer of Annotations to Cells and their COmbinations☆57Updated 3 weeks ago
- PhyloVelo, Phylogeny-based transcriptomic velocity of single cells☆43Updated last week
- ☆56Updated last year
- R implementation of GeneTrajectory☆65Updated last year
- Python implementation of Milo for differential abundance testing on KNN graph☆74Updated 7 months ago
- Principal analysis code used in for analysis of single cell RNAseq of primary untreated colon cancer. As described in: "Spatially organiz…☆38Updated 4 years ago
- ☆54Updated 10 months ago
- This repository contains all code used for the Human Lung Cell Atlas project.☆55Updated 2 years ago
- R package for pathway analysis in scRNA-seq data☆75Updated last year
- Analysis of cell-cell communication at single-cell resolution☆104Updated last year
- Aligning gene expression trajectories of single-cell reference and query systems☆76Updated last month
- Scripts and notebooks to reproduce all analysis from Massoni-Badosa et al. (2022)☆31Updated 8 months ago
- Gene group activity utility functions for Scanpy☆89Updated 9 months ago
- Predict RNA velocity through deep learning☆70Updated last year
- Functional Inference of Gene Regulation☆46Updated last year
- A tool for semi-automatic cell type harmonization and integration☆110Updated 6 months ago