whhudson / spatialTCRLinks
☆13Updated 3 years ago
Alternatives and similar repositories for spatialTCR
Users that are interested in spatialTCR are comparing it to the libraries listed below
Sorting:
- Python implementation of Milo for differential abundance testing on KNN graph☆74Updated 6 months ago
- pycisTopic is a Python module to simultaneously identify cell states and cis-regulatory topics from single cell epigenomics data.☆74Updated last month
- Code to reproduce the analysis of "Decoding gene regulation in the mouse embryo using single-cell multi-omics""☆40Updated 2 years ago
- User-friendly tool to infer cell-cell interactions and communication from gene expression of interacting proteins☆64Updated this week
- Spatial Transcriptomics Algorithm Reconstructing Copy-number Heterogeneity☆27Updated last year
- Single cell omics biology annotations☆51Updated 4 months ago
- Single-Cell Analysis of Inter-Individual Variability by Interpretable Tensor Decomposition☆61Updated last year
- Inferring allele-specific copy number aberrations and tumor phylogeography from spatially resolved transcriptomics☆41Updated 2 weeks ago
- Clone Calling from Visium Spatial Transcriptomics of Cancer samples☆77Updated 2 years ago
- ☆54Updated 10 months ago
- ☆80Updated last week
- Metacells - Single-cell RNA Sequencing Analysis☆111Updated 11 months ago
- ☆45Updated last year
- Gene group activity utility functions for Scanpy☆84Updated 8 months ago
- PhyloVelo, Phylogeny-based transcriptomic velocity of single cells☆43Updated last year
- ☆57Updated 2 months ago
- Tutorials for the SCOG Virtual Workshop ‘Spatial transcriptomics data analysis in Python’ - May 23-24, 2022☆53Updated 3 years ago
- Predict RNA velocity through deep learning☆70Updated last year
- Python package for analysis of multiomic single cell RNA-seq and ATAC-seq.☆64Updated last month
- ☆55Updated 11 months ago
- TACCO: Transfer of Annotations to Cells and their COmbinations☆54Updated this week
- ST Pipeline contains the tools and scripts needed to process and analyze the raw files generated with the Spatial Transcriptomics method …☆86Updated 5 months ago
- Single-Cell Clustering Assessment Framework☆105Updated last year
- Single-cell Lung Cancer Atlas with 1.2M cells☆68Updated 7 months ago
- Spatial Cellular Estimator for Tumors☆57Updated last week
- A tool for semi-automatic cell type harmonization and integration☆109Updated 5 months ago
- ☆125Updated 3 years ago
- Snakemake pipeline that works with the scIB package to benchmark data integration methods.☆76Updated 7 months ago
- R implementation of GeneTrajectory☆63Updated last year
- Inference of RNA velocity modules for prediction of cell fates and integration with spatial and regulatory models.☆79Updated 5 months ago