statbiophys / pygor3Links
pygor3 repository
☆10Updated 2 months ago
Alternatives and similar repositories for pygor3
Users that are interested in pygor3 are comparing it to the libraries listed below
Sorting:
- Clonotype Neighbor Graph Analysis☆95Updated 5 months ago
- Ultrafast TCR clustering algorithm based on geometric isometry☆71Updated last year
- Compute generation probabilities of CDR3 amino acid and nucleotide sequences☆63Updated 2 months ago
- Multi-omic velocity inference☆116Updated last year
- Grouping of Lymphocyte Interactions by Paratope Hotspots☆96Updated 5 years ago
- Highly specific clustering of T cell receptor CDR3s☆43Updated 3 years ago
- flexible CDR based distance metrics☆69Updated last month
- Software tools for the analysis of epitope-specific T cell receptor (TCR) repertoires (scroll down for the README)☆86Updated 4 years ago
- R package to access DoRothEA's regulons☆154Updated last year
- Compendium of available lists of ligand-receptor pairs and surface-secreted protein interactions.☆149Updated 3 years ago
- Bias factorized, base-resolution deep learning models of chromatin accessibility (chromBPNet)☆207Updated this week
- Geometry-preserving random sampling☆95Updated last year
- Codebase for PRESCIENT (Potential eneRgy undErlying Single Cell gradIENTs) for generative modeling of single-cell time-series.☆52Updated last year
- Supervised Pathway DEConvolution of InTerpretable Gene ProgRAms☆188Updated last week
- scDesign3 generates realistic in silico data for multimodal single-cell and spatial omics☆113Updated 4 months ago
- Using TCR and expression for sequence embedding☆62Updated last month
- ☆62Updated 8 months ago
- software to detect doublets☆96Updated last year
- ☆56Updated last year
- Single cell omics biology annotations☆53Updated 9 months ago
- scPerturb: A resource and a python/R tool for single-cell perturbation data☆165Updated 11 months ago
- Context specific and dynamic gene regulatory network reconstruction and analysis☆127Updated 2 months ago
- CZ CELLxGENE Discover Census☆117Updated 3 weeks ago
- pseudobulking on an AnnData object☆34Updated 10 months ago
- Detecting TCR involved in immune responses from single RepSeq datasets☆27Updated 6 years ago
- Decima is a Python library to train sequence models on single-cell RNA-seq data.☆62Updated last week
- Collection of Tumor-Infiltrating Lymphocyte Single-Cell Experiments with TCR☆104Updated last month
- SEACells algorithm for Inference of transcriptional and epigenomic cellular states from single-cell genomics data☆178Updated 10 months ago
- Reference-free cell-type deconvolution of multi-cellular spatially resolved transcriptomics data☆153Updated 6 months ago
- Python implementation of Milo for differential abundance testing on KNN graph☆81Updated 11 months ago