statbiophys / pygor3
pygor3 repository
☆9Updated 4 months ago
Related projects ⓘ
Alternatives and complementary repositories for pygor3
- Grouping of Lymphocyte Interactions by Paratope Hotspots☆90Updated 3 years ago
- Compute generation probabilities of CDR3 amino acid and nucleotide sequences☆48Updated 3 years ago
- flexible CDR based distance metrics☆55Updated 3 months ago
- Software tools for the analysis of epitope-specific T cell receptor (TCR) repertoires (scroll down for the README)☆79Updated 3 years ago
- dandelion - A single cell BCR/TCR V(D)J-seq analysis package for 10X Chromium 5' data☆109Updated this week
- Clonotype Neighbor Graph Analysis☆81Updated 2 months ago
- ☆37Updated 4 years ago
- Using TCR and expression for sequence embedding☆48Updated 3 weeks ago
- R package to access DoRothEA's regulons☆133Updated 8 months ago
- Geometry-preserving random sampling☆75Updated 3 weeks ago
- Deep Learning Methods for Parsing T-Cell Receptor Sequencing (TCRSeq) Data☆113Updated last year
- R package for the analysis of single-cell immune repertoires☆41Updated last month
- pseudobulking on an AnnData object☆27Updated last year
- Cellxgene Gateway allows you to use the Cellxgene Server provided by the Chan Zuckerberg Institute (https://github.com/chanzuckerberg/cel…☆56Updated 8 months ago
- Collection of Tumor-Infiltrating Lymphocyte Single-Cell Experiments with TCR☆84Updated 4 months ago
- ☆45Updated 2 weeks ago
- Single Cell Transcriptomics of 25 Human Organs to Create a Tabula Sapiens☆40Updated last year
- Infer copy number variation (CNV) from scRNA-seq data. Plays nicely with Scanpy.☆137Updated this week
- Code and data used in The Great Repertoire Project☆29Updated 3 years ago
- ⚙️ Matching T-cell repertoire against a database of TCR antigen specificities☆38Updated 6 years ago
- Python implementation of Milo for differential abundance testing on KNN graph☆60Updated last year
- Enables cellxgene to generate violin, stacked violin, stacked bar, heatmap, volcano, embedding, dot, track, density, 2D density, sankey a…☆134Updated 5 months ago
- bioinformatics plotting and tools☆53Updated 5 months ago
- Python package for analysis of multiomic single cell RNA-seq and ATAC-seq.☆60Updated 6 months ago
- ☆48Updated 10 months ago
- Compendium of available lists of ligand-receptor pairs and surface-secreted protein interactions.☆121Updated last year
- ERGO-II, an updated version of ERGO including more features for TCR-peptide binding prediction☆29Updated 2 years ago
- A unifying representation of single cell expression profiles that quantifies similarity between expression states and generalizes to repr…☆93Updated this week
- Single cell omics biology annotations☆48Updated 2 months ago
- ☆64Updated last year