statbiophys / pygor3
pygor3 repository
☆9Updated 7 months ago
Alternatives and similar repositories for pygor3:
Users that are interested in pygor3 are comparing it to the libraries listed below
- Compute generation probabilities of CDR3 amino acid and nucleotide sequences☆50Updated 3 years ago
- flexible CDR based distance metrics☆58Updated 6 months ago
- Grouping of Lymphocyte Interactions by Paratope Hotspots☆91Updated 4 years ago
- Clonotype Neighbor Graph Analysis☆83Updated 5 months ago
- IGoR is a C++ software designed to infer V(D)J recombination related processes from sequencing data. Find full documentation at:☆51Updated 2 years ago
- ☆50Updated 4 months ago
- Software tools for the analysis of epitope-specific T cell receptor (TCR) repertoires (scroll down for the README)☆80Updated 3 years ago
- ☆38Updated 4 years ago
- Using TCR and expression for sequence embedding☆52Updated last month
- TraCeR - reconstruction of T cell receptor sequences from single-cell RNAseq data☆126Updated last year
- R package for the analysis of single-cell immune repertoires☆42Updated 3 weeks ago
- 🗂️ [vdjdb.cdr3.net is up and running] Git-based TCR database storage & management. Submissions welcome!☆134Updated this week
- 📝 [Paper/Tutorial] T-cell repertoire annotation and motif discovery☆13Updated 4 years ago
- Collection of Tumor-Infiltrating Lymphocyte Single-Cell Experiments with TCR☆83Updated 8 months ago
- dandelion - A single cell BCR/TCR V(D)J-seq analysis package for 10X Chromium 5' data☆112Updated this week
- ⚙️ Matching T-cell repertoire against a database of TCR antigen specificities☆38Updated 6 years ago
- R package to access DoRothEA's regulons☆142Updated last year
- Code and data used in The Great Repertoire Project☆30Updated 3 years ago
- Detecting TCR involved in immune responses from single RepSeq datasets☆25Updated 5 years ago
- Code repository for the Tumor Immune Cell Atlas (TICA) project☆62Updated 2 years ago
- Deep Learning Methods for Parsing T-Cell Receptor Sequencing (TCRSeq) Data☆117Updated 2 years ago
- Stitchr - a Python script to stitch together coding TCR nucleotide sequences from V, J, and CDR3 info☆51Updated this week
- immuneML is a platform for machine learning analysis of adaptive immune receptor repertoire data.☆66Updated this week
- CDR3 clustering module providing a new method for fast and accurate clustering of large data sets of CDR3 amino acid sequences, and offer…☆52Updated 11 months ago
- ☆58Updated 4 years ago
- Python package for analysis of multiomic single cell RNA-seq and ATAC-seq.☆60Updated 10 months ago
- scPerturb: A resource and a python/R tool for single-cell perturbation data☆113Updated this week
- ☆51Updated last year
- scDesign3 generates realistic in silico data for multimodal single-cell and spatial omics☆89Updated 3 weeks ago
- Python implementation of Milo for differential abundance testing on KNN graph☆62Updated 2 weeks ago