bcgsc / ChopStitchLinks
Finding putative exons and constructing splicegraphs using Trans-ABySS contigs
☆11Updated 6 years ago
Alternatives and similar repositories for ChopStitch
Users that are interested in ChopStitch are comparing it to the libraries listed below
Sorting:
- This repo is deprecated. Please use gfatools instead.☆16Updated 6 years ago
- ☆16Updated 3 years ago
- ☆25Updated 4 years ago
- A script to extract graph structure from multiple sequence alignment result and output as GFA/JSON for vg☆12Updated 6 years ago
- ☆28Updated 3 months ago
- ☆11Updated 2 years ago
- Convert HAL to VG☆22Updated 11 months ago
- Utilities to detect and profile `het-kmers`☆11Updated 11 months ago
- PanGenome Graph Building with the first 100 assemblies from the 1000G ONT Sequencing Consortium☆12Updated 3 months ago
- Pangenome Graph Variation Format (PGVF)☆20Updated 4 years ago
- Importing vg json graphs to Python data structures.☆10Updated 4 years ago
- ☆16Updated 4 years ago
- ☆9Updated last year
- Economic Genome Assembly from Low Coverage Illumina and Nanopore Data☆20Updated 3 years ago
- a toolset for fast DNA read set matching and assembly using a new type of reduced kmer☆37Updated 3 years ago
- Linear-time, low-memory construction of variation graphs☆20Updated 5 years ago
- Long read aligner for cyclic and acyclic pangenome graphs☆39Updated last year
- recompute GFA link overlaps☆25Updated 2 years ago
- Compare different genome alignment tools using a wide range of genomes with different complexities.☆13Updated 2 years ago
- genome variation graphs constructed from HLA GRCh38 ALTs☆23Updated 3 years ago
- Kmer based genotyper for short reads.☆23Updated 3 years ago
- ☆26Updated 3 years ago
- A software for discovery, genotyping and characterization of structural variants☆22Updated 10 months ago
- convert variation graph alignments to coverage maps over nodes☆24Updated 3 weeks ago
- Population-scale detection of non-reference sequence variants using colored de Bruijn Graphs☆24Updated last year
- Convert structural variants to sequence graphs [ VCF + FASTA ---> GFA ]☆12Updated last year
- syncmer graphs, and perhaps other sorts of sequence graphs☆20Updated 3 months ago
- Scaffolding with assembly likelihood optimization☆22Updated 4 years ago
- Extracts subgraphs or components from a graph in GFA format☆23Updated 8 months ago
- tandem repeat finding from erroneous long reads☆15Updated 3 years ago