bcgsc / ChopStitchLinks
Finding putative exons and constructing splicegraphs using Trans-ABySS contigs
☆11Updated 7 years ago
Alternatives and similar repositories for ChopStitch
Users that are interested in ChopStitch are comparing it to the libraries listed below
Sorting:
- ☆16Updated 4 years ago
- This repo is deprecated. Please use gfatools instead.☆15Updated 7 years ago
- Convert structural variants to sequence graphs [ VCF + FASTA ---> GFA ]☆11Updated last year
- Lift-over alignments from variant-aware references☆34Updated 2 years ago
- A script to extract graph structure from multiple sequence alignment result and output as GFA/JSON for vg☆11Updated 6 years ago
- ☆28Updated 10 months ago
- ☆24Updated 5 months ago
- Kmer based genotyper for short reads.☆23Updated 4 years ago
- Population-scale detection of non-reference sequence variants using colored de Bruijn Graphs☆26Updated last year
- Compare different genome alignment tools using a wide range of genomes with different complexities.☆14Updated 3 years ago
- ☆11Updated 3 years ago
- Economic Genome Assembly from Low Coverage Illumina and Nanopore Data☆19Updated 3 years ago
- convert variation graph alignments to coverage maps over nodes☆27Updated 3 weeks ago
- Utilities to detect and profile `het-kmers`☆12Updated last year
- For bluntifying overlapped GFAs☆13Updated last year
- Comprehensive alignment, whole-genome coverage, and capture coverage statistics.☆19Updated last year
- Estimation of per-individual inbreeding coefficients under a probabilistic framework☆21Updated 2 years ago
- genome variation graphs constructed from HLA GRCh38 ALTs☆23Updated 4 years ago
- Convert HAL to VG☆23Updated last year
- syncmer graphs, and perhaps other sorts of sequence graphs☆24Updated last month
- Filter of Pairwise Alignement☆44Updated 4 years ago
- ☆18Updated 2 years ago
- GBWT-based handle graph☆31Updated this week
- ☆14Updated 2 years ago
- Processing WGS aDNA data using the ReichLab protocol☆13Updated 6 years ago
- the we-flyin WFA-guided ultralong tiling sequence aligner☆10Updated 4 years ago
- Long read aligner for cyclic and acyclic pangenome graphs☆40Updated 2 years ago
- Linear-time, low-memory construction of variation graphs☆20Updated 6 years ago
- ☆26Updated 4 years ago
- a toolset for fast DNA read set matching and assembly using a new type of reduced kmer☆37Updated 4 years ago