C++ library for parsing several formats in bioinformatics
☆10May 18, 2023Updated 3 years ago
Alternatives and similar repositories for bioparser
Users that are interested in bioparser are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Layout module for raw de novo genome assembly of long uncorrected reads.☆21Feb 2, 2021Updated 5 years ago
- SIMD partial order alignment tool/library☆186Oct 15, 2026Updated 2 weeks ago
- SWORD - a highly efficient protein database search☆26Jan 15, 2024Updated 2 years ago
- comparative genome dot plot viewer☆10May 19, 2019Updated 7 years ago
- bíogo ncbi utilities repository☆21Jun 27, 2021Updated 5 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- 🧬 Viral genome reference alignment☆12Jan 26, 2021Updated 5 years ago
- Alignment, quantification and fusion prediction from long RNA reads☆10Apr 11, 2022Updated 4 years ago
- multi-tool QC for minion data☆11May 28, 2018Updated 8 years ago
- Nanopore read de-multiplexer☆13Mar 25, 2020Updated 6 years ago
- recompute GFA link overlaps☆26Sep 14, 2022Updated 4 years ago
- SARS-CoV-2 Deep Sequencing☆14Apr 22, 2020Updated 6 years ago
- Manipulate and generate figures for trees in Newick format☆22Jul 31, 2025Updated last year
- Bam Read Index - Extract alignments from a bam file by readname☆29Apr 22, 2024Updated 2 years ago
- Graph-based mapping of long sequences, noisy or HiFi.☆55Oct 5, 2020Updated 6 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- A C++ header-only library for reading Oxford Nanopore Fast5 files☆53Jun 27, 2022Updated 4 years ago
- Integrated toolkit for analysis and evaluation of annotated genomes☆25Aug 1, 2025Updated last year
- Just a python fasta/q parser based on kseq.h☆14Jul 13, 2020Updated 6 years ago
- CroUS keyboard for Windows☆13Jan 1, 2017Updated 9 years ago
- Efficient C functions to compute the summary statistics (flagstats) for sequencing read sets.☆16Aug 1, 2026Updated 3 months ago
- Reader and writer of HDF5 files☆18Jul 15, 2017Updated 9 years ago
- Small general purpose library for C and Python with focus on bioinformatics.☆31Sep 15, 2022Updated 4 years ago
- Plot multiple sequence alignment (MSA)☆17Apr 21, 2026Updated 6 months ago
- Bioinformatics pipeline for nanopore sequencing data☆11Jan 4, 2019Updated 7 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- ☆13Sep 11, 2025Updated last year
- ☆17Oct 1, 2026Updated last month
- SARS-CoV-2: detecting recombinations in viruses using large data sets with high sequence similarity☆13Aug 14, 2023Updated 3 years ago
- ☆13Oct 13, 2021Updated 5 years ago
- NanopolishComp is a Python3 package for downstream analyses of Nanopolish output files☆10Dec 22, 2020Updated 5 years ago
- An example of a data analysis pipeline using Make☆17Jul 26, 2016Updated 10 years ago
- A (very) fast program for getting statistics about a fastq file, the way I need them, written in Rust☆34Jul 27, 2026Updated 3 months ago
- Dynamic time warping of Oxford Nanopore squiggle data to characterize tandem repeats.☆32Jul 2, 2020Updated 6 years ago
- Long read to reference genome mapping tool☆13Mar 14, 2024Updated 2 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- RNAcode - Detecting protein coding genes in multiple sequence alignment☆27Aug 22, 2024Updated 2 years ago
- ☆18Mar 5, 2017Updated 9 years ago
- A tool for de novo clustering of long transcriptomic reads☆14Oct 2, 2022Updated 4 years ago
- Error correction of ONT transcript reads☆58Oct 17, 2026Updated 2 weeks ago
- This repository is deprecated, please use the link to the right.☆23Dec 11, 2018Updated 7 years ago
- Make coverage plots from bam files!☆16Mar 17, 2026Updated 7 months ago
- InterARTIC - An interactive local web application for viral whole genome sequencing utilising the artic network pipelines..☆31Dec 27, 2023Updated 2 years ago