Alternatives and similar repositories for bioparser

Users that are interested in bioparser are comparing it to the libraries listed below

• rvaser / rala
  Layout module for raw de novo genome assembly of long uncorrected reads.
  ☆21Updated 4 years ago
• VGP / vgp-tools
  ☆28Updated 4 months ago
• bcgsc / physlr
  Construct a Physical Map from Linked Reads
  ☆18Updated last year
• lh3 / gfa1
  This repo is deprecated. Please use gfatools instead.
  ☆16Updated 6 years ago
• richarddurbin / modimizer
  a toolset for fast DNA read set matching and assembly using a new type of reduced kmer
  ☆37Updated 4 years ago
• jltsiren / gbwtgraph
  GBWT-based handle graph
  ☆31Updated last month
• prophyle / prophasm
  ProphAsm – a rapid computation of simplitigs directly from k-mer sets
  ☆26Updated 2 years ago
• ekg / viral-assembly
  exploring viral genome assembly with variation graph tools
  ☆20Updated 5 years ago
• bioinfologics / sdg
  Sequence Distance Graph framework: graph + reads + mapping + analysis
  ☆26Updated 3 years ago
• langmead-lab / vargas
  ☆25Updated 4 years ago
• lh3 / partig
  An experimental tool to estimate the similarity between all pairs of contigs
  ☆35Updated 4 years ago
• bede / kindel
  Indel-aware consensus for aligned BAM
  ☆21Updated 4 months ago
• DecodeGenetics / LRcaller
  ☆16Updated 3 years ago
• ChaissonLab / hmcnc
  Hidden Markov Model based Copy number caller
  ☆20Updated 9 months ago
• edawson / svaha2
  Linear-time, low-memory construction of variation graphs
  ☆20Updated 5 years ago
• mchaisso / mcutils
  ☆12Updated 3 months ago
• ekg / wflign
  the we-flyin WFA-guided ultralong tiling sequence aligner
  ☆11Updated 4 years ago
• ZekunYin / RabbitMash
  RabbitMash: an efficient highly optimized implementation of Mash.
  ☆21Updated last year
• jts / mbtools
  ☆14Updated last year
• SJTU-CGM / CDKAM
  ☆10Updated 4 years ago
• lh3 / sdust
  Symmetric DUST for finding low-complexity regions in DNA sequences
  ☆44Updated 2 weeks ago
• natir / fpa
  Filter of Pairwise Alignement
  ☆45Updated 3 years ago
• dfguan / cgplot
  comparative genome dot plot viewer
  ☆9Updated 6 years ago
• Malfoy / NIQKI
  Next Index to Query Kmer Intersection
  ☆16Updated 2 years ago
• lh3 / unicall
  A wrapper for calling small variants from human germline high-coverage single-sample Illumina data
  ☆14Updated 6 years ago
• mklarqvist / djinn
  C++ library for analysing and storing large-scale cohorts of sequence variant data
  ☆17Updated 5 years ago
• rcedgar / urmap
  URMAP ultra-fast read mapper
  ☆39Updated 5 years ago
• kcleal / svbench
  Benchmark structural variant calls against a reference set
  ☆17Updated 9 months ago
• AntonBankevich / jumboDB
  De Bruijn graph construction for large k.
  ☆18Updated 3 years ago
• ldenti / palss
  ☆21Updated last month