royfrancis / pophelper
An R package to analyse and visualise admixture proportions from STRUCTURE, fastSTRUCTURE, TESS, ADMIXTURE etc.
☆146Updated last year
Alternatives and similar repositories for pophelper:
Users that are interested in pophelper are comparing it to the libraries listed below
- Shiny apps for teaching Population Genetics☆61Updated last year
- A primer for computational tools to analyze genetics of populations in R☆86Updated 3 years ago
- method for modeling continuous and discrete population genetic structure☆35Updated last year
- Pdfs of slides from 2018 popgen course☆36Updated 6 years ago
- Estimating Effective Migration Surfaces☆102Updated last year
- 🌶 An R package for genetic analysis of populations with mixed (clonal/sexual) reproduction☆68Updated 8 months ago
- Tutorials for bioinformatics and data analysis related to landscape genomics☆26Updated 5 years ago
- Structure Harvester is a program for parsing the output of Pritchard's STRUCTURE and for performing the Evanno method.☆28Updated 2 years ago
- functions to analyse sanger sequencing reads in R☆99Updated 9 months ago
- Population and Evolutionary Genetics Analysis System☆29Updated 6 months ago
- ☆52Updated 2 years ago
- adegenet: a R package for the multivariate analysis of genetic markers☆175Updated 3 months ago
- Redundancy Analysis allowing to both estimate the percent of genomic variation explained by each variable as well as to detect the putati…☆8Updated 4 years ago
- a bash pipeline for RAD sequencing☆52Updated 8 months ago
- the hierfstat package☆24Updated last month
- diversity estimation under ecological networks☆83Updated last year
- Performing highly efficient genome scans for local adaptation with R package pcadapt v4☆39Updated 3 months ago
- RADseq Data Exploration, Manipulation and Visualization using R☆59Updated 2 months ago
- R package and web app for spatial visualisation of admixture on a projected map☆41Updated 3 weeks ago
- ☆168Updated 4 years ago
- Sydney Phylogenetics Workshop☆63Updated last week
- Population genetic simulations in R 🌍☆55Updated 2 weeks ago
- eDNA metabarcoding pipeline☆31Updated last month
- Pipeline to take VCF through to Selection Analysis.☆58Updated 2 years ago
- ☆13Updated 2 years ago
- Genotype Calling with Uncertainty from Sequencing Data in Polyploids 🍌🍓🥔🍠🥝☆28Updated last year
- Miscellaneous functions for metagenomic analysis.☆47Updated 6 months ago
- Differential abundance (DA) and correlation analyses for microbial absolute abundance data☆112Updated last week
- strataG is a toolkit for haploid sequence and multilocus genetic data summaries, and analyses of population structure.☆25Updated 8 months ago
- Automatically exported from code.google.com/p/jmodeltest2☆77Updated 3 years ago