An R package to analyse and visualise admixture proportions from STRUCTURE, fastSTRUCTURE, TESS, ADMIXTURE etc.
☆151Dec 22, 2025Updated 3 months ago
Alternatives and similar repositories for pophelper
Users that are interested in pophelper are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A variational framework for inferring population structure from SNP genotype data.☆143Jan 6, 2023Updated 3 years ago
- Code to compute the XP-CLR statistic to infer natural selection☆103Jun 13, 2022Updated 3 years ago
- Scripts for analysis used during the course☆96Apr 30, 2024Updated last year
- Tools test whether admixture occurred and more☆222Sep 6, 2024Updated last year
- Module for analysing admixture graphs☆28Apr 30, 2018Updated 7 years ago
- Wordpress hosting with auto-scaling on Cloudways • AdFully Managed hosting built for WordPress-powered businesses that need reliable, auto-scalable hosting. Cloudways SafeUpdates now available.
- Convert SNPs in VCF format to PHYLIP, NEXUS, binary NEXUS, or FASTA alignments for phylogenetic analysis☆333Jul 7, 2023Updated 2 years ago
- Fast calculation of Patterson's D (ABBA-BABA) and the f4-ratio statistics across many populations/species☆186Dec 19, 2024Updated last year
- VCF-kit: Assorted utilities for the variant call format☆134Jul 10, 2025Updated 8 months ago
- Repository for speciation genomics website☆27Aug 30, 2025Updated 6 months ago
- R package for binmap☆12Aug 3, 2023Updated 2 years ago
- Effective selection of population size projection for construction of the site frequency spectrum. Convert VCF to dadi/fastsimcoal style …☆173Aug 8, 2024Updated last year
- adegenet: a R package for the multivariate analysis of genetic markers☆200Feb 7, 2025Updated last year
- R package: parallel computing toolset for relatedness and principal component analysis of SNP data (Development version only)☆112Oct 21, 2025Updated 5 months ago
- General tools for genomic analyses.☆388Feb 28, 2025Updated last year
- DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Calculation of pairwise Linkage Disequilibrium (LD) under a probabilistic framework☆50Nov 13, 2023Updated 2 years ago
- Kinship Adjusted Multi-Loci Best Linear Unbiased Prediction☆47Apr 8, 2025Updated 11 months ago
- A package for population structure inference from RAD-seq data☆35May 14, 2021Updated 4 years ago
- Population assignment analysis using R☆15Jul 4, 2025Updated 8 months ago
- Simple and flexible manipulation of genomic data.☆16Apr 16, 2025Updated 11 months ago
- A pipeline to generate a phylogenetic tree from huge SNP data☆94Dec 30, 2023Updated 2 years ago
- An R script to generate plots for ADMIXTURE runs, for multiple K values.☆19Feb 27, 2025Updated last year
- ☆22Apr 2, 2015Updated 10 years ago
- Programs to analyse NGS data for population genetics purposes☆181Aug 27, 2024Updated last year
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Tool for assessing/improving assembly quality in extra-long tandem repeats☆47Feb 23, 2021Updated 5 years ago
- ☆37Nov 30, 2023Updated 2 years ago
- ABC random forests for model choice and parameter estimation, pure C++ implementation☆10Oct 7, 2024Updated last year
- the hierfstat package☆25Nov 20, 2024Updated last year
- PopLDdecay: a fast and effective tool for linkage disequilibrium decay analysis based on variant call format(VCF) files☆204Aug 15, 2024Updated last year
- ☆11Oct 23, 2019Updated 6 years ago
- Version 5 of the CAFE phylogenetics software☆164Mar 16, 2026Updated 2 weeks ago
- SMC++ infers population history from whole-genome sequence data.☆173Jan 20, 2024Updated 2 years ago
- an R package for admixture analyses☆18May 15, 2015Updated 10 years ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- Main scripts and commands used to analyze goat population genetic and domestication☆19Mar 25, 2019Updated 7 years ago
- An R Package to build and simulate coalescent models☆20Updated this week
- An R interface for the ADMIXTOOLS software☆35Nov 24, 2025Updated 4 months ago
- RADseq Data Exploration, Manipulation and Visualization using R☆60Sep 4, 2025Updated 6 months ago
- ☆33Feb 24, 2026Updated last month
- ☆23Jan 11, 2019Updated 7 years ago
- Likelihood-based Selective Sweep Detection☆41Oct 12, 2023Updated 2 years ago