An R package to analyse and visualise admixture proportions from STRUCTURE, fastSTRUCTURE, TESS, ADMIXTURE etc.
☆151Dec 22, 2025Updated 2 months ago
Alternatives and similar repositories for pophelper
Users that are interested in pophelper are comparing it to the libraries listed below
Sorting:
- Code to compute the XP-CLR statistic to infer natural selection☆102Jun 13, 2022Updated 3 years ago
- A variational framework for inferring population structure from SNP genotype data.☆143Jan 6, 2023Updated 3 years ago
- Module for analysing admixture graphs☆28Apr 30, 2018Updated 7 years ago
- Scripts for analysis used during the course☆95Apr 30, 2024Updated last year
- R package for binmap☆12Aug 3, 2023Updated 2 years ago
- Tools test whether admixture occurred and more☆220Sep 6, 2024Updated last year
- Fast calculation of Patterson's D (ABBA-BABA) and the f4-ratio statistics across many populations/species☆185Dec 19, 2024Updated last year
- Convert SNPs in VCF format to PHYLIP, NEXUS, binary NEXUS, or FASTA alignments for phylogenetic analysis☆330Jul 7, 2023Updated 2 years ago
- adegenet: a R package for the multivariate analysis of genetic markers☆199Feb 7, 2025Updated last year
- R package: parallel computing toolset for relatedness and principal component analysis of SNP data (Development version only)☆111Oct 21, 2025Updated 4 months ago
- VCF-kit: Assorted utilities for the variant call format☆133Jul 10, 2025Updated 7 months ago
- Calculation of pairwise Linkage Disequilibrium (LD) under a probabilistic framework☆50Nov 13, 2023Updated 2 years ago
- Kinship Adjusted Multi-Loci Best Linear Unbiased Prediction☆47Apr 8, 2025Updated 11 months ago
- General tools for genomic analyses.☆386Feb 28, 2025Updated last year
- Repository for speciation genomics website☆27Aug 30, 2025Updated 6 months ago
- Programs to analyse NGS data for population genetics purposes☆179Aug 27, 2024Updated last year
- PopLDdecay: a fast and effective tool for linkage disequilibrium decay analysis based on variant call format(VCF) files☆203Aug 15, 2024Updated last year
- Version 5 of the CAFE phylogenetics software☆163Feb 12, 2025Updated last year
- Tool for assessing/improving assembly quality in extra-long tandem repeats☆47Feb 23, 2021Updated 5 years ago
- BITACORA: A Bioinformatics tool for gene family annotation☆53Dec 10, 2025Updated 2 months ago
- A pipeline to generate a phylogenetic tree from huge SNP data☆94Dec 30, 2023Updated 2 years ago
- Population assignment analysis using R☆15Jul 4, 2025Updated 8 months ago
- an R package for admixture analyses☆18May 15, 2015Updated 10 years ago
- Effective selection of population size projection for construction of the site frequency spectrum. Convert VCF to dadi/fastsimcoal style …☆172Aug 8, 2024Updated last year
- ☆11Oct 23, 2019Updated 6 years ago
- ☆15Aug 6, 2025Updated 7 months ago
- An R script to generate plots for ADMIXTURE runs, for multiple K values.☆19Feb 27, 2025Updated last year
- SMC++ infers population history from whole-genome sequence data.☆173Jan 20, 2024Updated 2 years ago
- findGSE is a tool for estimating size of (heterozygous diploid or homozygous) genomes by fitting k-mer frequencies iteratively with a ske…☆38Jan 16, 2024Updated 2 years ago
- ☆23Jan 11, 2019Updated 7 years ago
- Scripts for homology and orthology assessment from genomic sequences.☆19Oct 5, 2020Updated 5 years ago
- the hierfstat package☆25Nov 20, 2024Updated last year
- ☆31Feb 24, 2026Updated last week
- Simple and flexible manipulation of genomic data.☆16Apr 16, 2025Updated 10 months ago
- ☆14Feb 22, 2022Updated 4 years ago
- Scripts to estimate genome size and coverage from kmer distribution generated by jellyfish☆57Jan 26, 2023Updated 3 years ago
- Genome Association Predict Integrate Tools☆220Dec 3, 2025Updated 3 months ago
- DFOIL: Introgression Testing for Five Taxa☆33May 15, 2021Updated 4 years ago
- An R interface for the ADMIXTOOLS software☆35Nov 24, 2025Updated 3 months ago