RADseq Data Exploration, Manipulation and Visualization using R
☆60Sep 4, 2025Updated 8 months ago
Alternatives and similar repositories for radiator
Users that are interested in radiator are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Population assignment analysis using R☆15Jul 4, 2025Updated 10 months ago
- Collection of Python scripts for parsing/analyses of RAD-seq data☆25Mar 20, 2026Updated last month
- A package for population structure inference from RAD-seq data☆35May 14, 2021Updated 4 years ago
- strataG is a toolkit for haploid sequence and multilocus genetic data summaries, and analyses of population structure.☆26Jan 5, 2026Updated 4 months ago
- Simple and flexible manipulation of genomic data.☆16Apr 16, 2025Updated last year
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- Source code for the program MavericK, described fully at www.bobverity.com/maverick☆12Jun 21, 2018Updated 7 years ago
- RADseq workflow using STACKS☆61Apr 24, 2026Updated 2 weeks ago
- diveRsity: A comprehensive, general purpose population genetics analysis package.☆26Mar 8, 2026Updated 2 months ago
- microhaplotype visualizer and analyzer☆20Jun 24, 2021Updated 4 years ago
- A tool to calculate ploidy levels from genotype likelihoods and coverage using Hidden Markov Models☆18Nov 29, 2022Updated 3 years ago
- Importing and Analysing DArT type snp and silicodart data☆36Mar 27, 2025Updated last year
- Simultaneous multi-sample transcript assembler for RNA-seq data☆18Dec 13, 2024Updated last year
- Bayesian gene tree reconciliation and WGD inference using amalgamated likelihood estimation☆16Apr 29, 2025Updated last year
- a tool to identify species and inter-species hybrids and chromosome copy number variants from short-read data☆19Sep 13, 2019Updated 6 years ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- A framework for simulation-based inference in evolutionary biology☆28Jan 13, 2026Updated 3 months ago
- Program for analysing NGS data.☆258Mar 6, 2025Updated last year
- An R package for predicting ploidal level from sequence data using site-based heterozygosity☆19Feb 19, 2026Updated 2 months ago
- Fast calculation of Patterson's D (ABBA-BABA) and the f4-ratio statistics across many populations/species☆186Dec 19, 2024Updated last year
- a bash pipeline for RAD sequencing☆55Jan 27, 2025Updated last year
- Genotype Calling with Uncertainty from Sequencing Data in Polyploids 🍌🍓🥔🍠🥝☆33Mar 23, 2026Updated last month
- Effective selection of population size projection for construction of the site frequency spectrum. Convert VCF to dadi/fastsimcoal style …☆173Apr 17, 2026Updated 3 weeks ago
- R package: parallel computing toolset for relatedness and principal component analysis of SNP data (Development version only)☆112Apr 17, 2026Updated 3 weeks ago
- An Efficient Swiss Army Knife for Population Genomic Analyses in R☆39May 21, 2024Updated last year
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- a short graduate population biology course☆13Feb 22, 2023Updated 3 years ago
- Taxonomy-aware DNA sequence processing toolkit☆34Feb 23, 2026Updated 2 months ago
- ☆23Jan 11, 2019Updated 7 years ago
- Module for analysing admixture graphs☆28Apr 30, 2018Updated 8 years ago
- ABLE - Approximate Blockwise Likelihood Estimation☆17Jul 4, 2018Updated 7 years ago
- Naive PCA for genotype data☆10Jul 27, 2016Updated 9 years ago
- Distribution maps and niche models for venomous snakes.☆12Mar 22, 2026Updated last month
- An accessible and flexible tool for fitting demographic models with dadi using custom or published models (available here), conducting go…☆67Apr 25, 2024Updated 2 years ago
- ☆38Apr 13, 2026Updated 3 weeks ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- Reference genome quality scores☆20Dec 17, 2020Updated 5 years ago
- Infer demographic history with the Moran model☆51Jun 14, 2025Updated 10 months ago
- An R package to analyse and visualise admixture proportions from STRUCTURE, fastSTRUCTURE, TESS, ADMIXTURE etc.☆151Dec 22, 2025Updated 4 months ago
- BayeScEnv is a Fst-based, genome-scan method that uses environmental variables to detect local adaptation.☆19Aug 29, 2017Updated 8 years ago
- TESS3 is a fast and efficient program for estimating spatial population structure based on geographically constrained non-negative matrix…☆22Jun 21, 2023Updated 2 years ago
- An R Package to build and simulate coalescent models☆20Apr 22, 2026Updated 2 weeks ago
- A variational framework for inferring population structure from SNP genotype data.☆143Jan 6, 2023Updated 3 years ago