Alternatives and similar repositories for KAML:

Users that are interested in KAML are comparing it to the libraries listed below

• YinLiLin / hibayes
  Individual-Level, Summary-Level and Single-Step Bayesian Regression Models for Genomic Prediction and Genome-Wide Association Studies
  ☆48Updated last year
• xiaolei-lab / SIMER
  Data Simulation for Life Science and Breeding
  ☆28Updated 2 weeks ago
• rwdavies / QUILT
  QUILT: Low coverage whole genome sequence imputation with large reference panels
  ☆55Updated 2 months ago
• amkusmec / FarmCPUpp
  Perform GWAS using the FarmCPU model.
  ☆23Updated last month
• slowkoni / rfmix
  RFMIX - Local Ancestry and Admixture Inference Version 2
  ☆81Updated 2 years ago
• syntheke / bayesR
  Bayesian hierarchical model for complex trait analysis
  ☆45Updated 11 months ago
• szpiech / selscan
  Haplotype based scans for selection
  ☆116Updated 2 months ago
• Menggg / BLINK
  BLINK: A Package for Next Level of Genome Wide Association Studies with Both Individuals and Markers in Millions
  ☆34Updated last month
• KosukeHamazaki / RAINBOWR
  Reliable Association INference By Optimizing Weights with R (R package for SNP-set GWAS and multi-kernel mixed model)
  ☆22Updated last month
• JimWhiting91 / genotype_plot
  A set of functions to visualise genotypes based on a VCF
  ☆85Updated 2 years ago
• bmansfeld / QTLseqr
  QTLseqr is an R package for QTL mapping using NGS Bulk Segregant Analysis
  ☆69Updated 4 years ago
• PhHermann / LDJump
  R Package to Estimate Variable Recombination Rates using Population Genetic Data
  ☆41Updated 5 years ago
• MerrimanLab / selectionTools
  Pipeline to take VCF through to Selection Analysis.
  ☆58Updated 2 years ago
• ramachandran-lab / pong
  Fast analysis and visualization of latent clusters in population genetic data
  ☆69Updated 2 years ago
• rcc-uchicago / genetic-data-analysis-2
  RCC workshop, "Analysis of Genetic Data 2: Mapping Genome-wide Associations."
  ☆24Updated last year
• xiaolei-lab / hiblup
  HIBLUP is an Integration of Statistical Methods Under BLUP Framework for Genomic Selection and Prediction
  ☆27Updated 3 years ago
• rwdavies / STITCH
  STITCH - Sequencing To Imputation Through Constructing Haplotypes
  ☆78Updated last week
• roberta-davidson / ADMIXTURE-smartPCA-PLINK-and-EIGENSOFT
  Scripts and notes on how to analyse ancient DNA genotype data to understand population structure
  ☆30Updated last year
• alexa-kur / miQTL_cookbook
  ☆46Updated 4 years ago
• jendelman / GWASpoly
  GWAS software that can handle autopolyploids
  ☆28Updated 3 months ago
• cooplab / Popgen_EVE102_2012
  Pdfs of slides from 2018 popgen course
  ☆36Updated 6 years ago
• cma2015 / G2P
  G2P is an integrated genomic selection (GS) package for predicting phenotypes from genotypes. It includes 15 GS algorithms and 13 evaluat…
  ☆12Updated 7 years ago
• voichek / kmersGWAS
  A library for running k-mers based GWAS
  ☆106Updated 2 months ago
• MarcooLopez / Genomic-Selection
  ☆24Updated 4 years ago
• gravelLab / tracts
  A set of tools for modelling ancestry patterns along the genome.
  ☆22Updated this week
• melindacmills / IntroStatisticalGenetics
  GitHub site to accompany Textbook Introduction to Statistical Genetic Data Analysis
  ☆27Updated 4 years ago
• whussain2 / Analysis-pipeline
  ☆34Updated 2 years ago
• akcorut / kGWASflow
  kGWASflow is a Snakemake workflow for performing k-mers-based GWAS.
  ☆31Updated 9 months ago
• alek0991 / iSAFE
  Pinpoints the mutation favored by selection
  ☆33Updated 3 years ago
• thlee / SNPhylo
  A pipeline to generate a phylogenetic tree from huge SNP data
  ☆86Updated last year