thlee / SNPhylo
A pipeline to generate a phylogenetic tree from huge SNP data
☆87Updated last year
Alternatives and similar repositories for SNPhylo:
Users that are interested in SNPhylo are comparing it to the libraries listed below
- VCF2Dis: A new simple and efficient software to calculate p-distance matrix and construct population phylogeny based Variant Call Forma…☆84Updated 2 weeks ago
- Few scripts facilitating the extraction of info from Repeat Masker .out files☆79Updated 3 years ago
- Reference-free profiling of polyploid genomes☆114Updated 8 months ago
- Same species annotation lift over pipeline.☆96Updated last year
- A set of functions to visualise genotypes based on a VCF☆85Updated 3 years ago
- Code to compute the XP-CLR statistic to infer natural selection☆94Updated 2 years ago
- A library for running k-mers based GWAS☆107Updated 4 months ago
- ☆70Updated 4 years ago
- NLR-Annotator upload☆64Updated last year
- Multi-level visualization of genomic statistical variables on rectangular chromosomes☆87Updated 4 months ago
- A flexible, scalable, and reproducible pipeline to automate variant calling from raw sequence reads, with lots of bells and whistles - fo…☆96Updated last month
- Tools for working with second gen assemblies, fasta sequences, etc☆93Updated 8 years ago
- ☆76Updated 8 months ago
- TEsorter: an accurate and fast method to classify LTR-retrotransposons in plant genomes☆92Updated last month
- Meta-pipeline to identify transposable element insertions using next generation sequencing data☆96Updated last year
- GCE (genomic charactor estimator) is a bayes model based method to estimate the genome size, genomic repeat content and the heterozygsis…☆49Updated 5 years ago
- MitoFinder: efficient automated large-scale extraction of mitogenomic data from high throughput sequencing data☆99Updated 11 months ago
- Program for estimating πN/πS, dN/dS, and other diversity measures from next-generation sequencing data☆111Updated last year
- Pipelines and tools for the processing of ancient and modern HTS data.☆47Updated last week
- A pipeline used to identify different modes of duplicated gene pairs☆97Updated 2 weeks ago
- A pipeline that accepts a VCF file to run through Admixture☆59Updated 2 months ago
- Genomic related tools☆71Updated 3 years ago
- ☆43Updated 8 years ago
- Dfam Transposable Element Tools Docker container.☆88Updated last week
- QTLseqr is an R package for QTL mapping using NGS Bulk Segregant Analysis☆72Updated 5 years ago
- Genome Scripts used in fungal comparative genomics☆65Updated 4 years ago
- This script will extract the intron feature gff3 and sequence from gene_exon gff3 and fasta file.☆33Updated 6 years ago
- A new simple and efficient software to PCA and Cluster For popolation VCF File☆69Updated last month
- dnaPipeTE (for de-novo assembly & annotation Pipeline for Transposable Elements), is a pipeline designed to find, annotate and quantify T…☆54Updated last year
- Generate an interactive dot plot from mummer or minimap alignments☆197Updated last year