Alternatives and similar repositories for adegenet

Users that are interested in adegenet are comparing it to the libraries listed below

• grunwaldlab / Population_Genetics_in_R
  A primer for computational tools to analyze genetics of populations in R
  ☆88Updated 4 years ago
• liamrevell / phytools
  ☆224Updated 2 months ago
• royfrancis / pophelper
  An R package to analyse and visualise admixture proportions from STRUCTURE, fastSTRUCTURE, TESS, ADMIXTURE etc.
  ☆149Updated 2 years ago
• KlausVigo / phangorn
  Phylogenetic analysis in R
  ☆209Updated last week
• yiluheihei / microbiomeMarker
  R package for microbiome biomarker discovery
  ☆189Updated 6 months ago
• knausb / vcfR
  Tools to work with variant call format files
  ☆262Updated 6 months ago
• mhahsler / rBLAST
  Interface for the Basic Local Alignment Search Tool (BLAST) - R-Package
  ☆112Updated 2 months ago
• YuLab-SMU / ggtreeExtra
  Add Geom Layers On Circular Or Other Layout Tree Of “ggtree”
  ☆93Updated last month
• gdlc / BGLR-R
  ☆109Updated 2 months ago
• roblanf / sangeranalyseR
  functions to analyse sanger sequencing reads in R
  ☆101Updated 6 months ago
• leonardojo / ggPlantmap
  ☆85Updated last year
• FrederickHuangLin / ANCOMBC
  Differential abundance (DA) and correlation analyses for microbial absolute abundance data
  ☆124Updated last week
• grunwaldlab / metacoder
  Parsing, Manipulation, and Visualization of Metabarcoding/Taxonomic data
  ☆144Updated 7 months ago
• statdivlab / corncob
  Count Regression for Correlated Observations with the Beta-binomial
  ☆106Updated 5 months ago
• cooplab / Popgen_EVE102_2012
  Pdfs of slides from 2018 popgen course
  ☆36Updated 6 years ago
• mblstamps / stamps2019
  Materials for the STAMPS 2019 course at the MBL in Woods Hole, MA, USA
  ☆34Updated 5 years ago
• microbiome / microbiome
  microbiome R package
  ☆306Updated 3 weeks ago
• famuvie / breedR
  Statistical methods for forest genetic resources analysts
  ☆35Updated last year
• silastittes / shiny_popgen
  Shiny apps for teaching Population Genetics
  ☆65Updated 2 years ago
• VascoElbrecht / JAMP
  JAMP - Just Another Metabarcoding Pipeline
  ☆37Updated 3 years ago
• microsud / Tools-Microbiome-Analysis
  A list of R environment based tools for microbiome data exploration, statistical analysis and visualization
  ☆115Updated 2 years ago
• grunwaldlab / poppr
  🌶 An R package for genetic analysis of populations with mixed (clonal/sexual) reproduction
  ☆71Updated this week
• lch14forever / microbiomeViz
  Visualize microbiome data with black magic ggtree
  ☆68Updated 5 years ago
• tidyomics / plyranges
  A grammar of genomic data transformation
  ☆148Updated 2 months ago
• lawremi / ggbio
  Grid and ggplot2 based visualization for biological data
  ☆115Updated last month
• cooplab / Popgen_teaching_code
  ☆52Updated 3 years ago
• david-barnett / microViz
  R package for microbiome data visualization and statistics. Uses phyloseq, vegan and the tidyverse. Docker image available.
  ☆119Updated last month
• bulksoil / BioProtocol
  Repo for a Microbiome Protocol
  ☆10Updated 7 years ago
• pmartinezarbizu / pairwiseAdonis
  Pairwise multilevel comparison using adonis
  ☆78Updated 2 years ago
• gauravsk / ranacapa
  R package for downstream analysis for anacapa eDNA pipeline
  ☆22Updated 3 years ago