ABC random forests for model choice and parameter estimation, pure C++ implementation
☆10Oct 7, 2024Updated 2 years ago
Alternatives and similar repositories for abcranger
Users that are interested in abcranger are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Crash Course on Approximate Bayesian Computation in Population Genetics☆11Sep 19, 2022Updated 4 years ago
- Tools for data conversion and results visualization for fineRADstructure (http://cichlid.gurdon.cam.ac.uk/fineRADstructure.html)☆10Mar 24, 2020Updated 6 years ago
- Code for the Bayesian Synthetic Likelihood paper by Price et al 2018 in the Journal of Computational and Graphical Statistics (volume 27,…☆15Feb 22, 2018Updated 8 years ago
- Sex assignment through coverage☆19May 23, 2025Updated last year
- ☆19Jan 24, 2018Updated 8 years ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- Tutorials for the Machine Learning for Time Series class - Master MVA (2021/2022)☆10Mar 3, 2022Updated 4 years ago
- A wrapper program to parallelize and automate runs of "Structure", "fastStructure" and "MavericK".☆26Jul 15, 2026Updated 3 months ago
- ksrates is a tool to position whole-genome duplications relative to speciation events using substitution-rate-adjusted mixed paralog-orth…☆25Oct 22, 2026Updated last week
- A package for population structure inference from RAD-seq data☆36May 14, 2021Updated 5 years ago
- genomic alignment similarity search tool☆20Jun 26, 2026Updated 4 months ago
- filtering SNPs based on LD and HWE status☆10Jul 3, 2023Updated 3 years ago
- script that convert vcf file into genotype data matrix to input DIYABC program.☆12Jul 9, 2015Updated 11 years ago
- Paper: Simple way of state based function composition.☆12Aug 13, 2022Updated 4 years ago
- An R package to analyse and visualise admixture proportions from STRUCTURE, fastSTRUCTURE, TESS, ADMIXTURE etc.☆151Dec 22, 2025Updated 10 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- A cookiecutter template that reflects my favored structure for setting up Snakemake-based analysis pipelines.☆16Jul 25, 2016Updated 10 years ago
- JTK -- a regional diploid genome assembler☆27Apr 22, 2026Updated 6 months ago
- Interactive assembly and analysis of RAD-seq data sets☆83Mar 3, 2026Updated 7 months ago
- A collection of CMake modules to simplify the development of Boost libraries.☆10Apr 16, 2012Updated 14 years ago
- F# pipeline engine for multi-stage AI workflows☆18Sep 13, 2026Updated last month
- 2D delaunay triangulation demo☆10Apr 30, 2018Updated 8 years ago
- A conda-smithy repository for nvcc.☆13Jan 23, 2025Updated last year
- K-mer specificity + SNP/ML + autoencoder pipeline for ancestry block phasing in allopolyploid genomes. Three modules (supervised / snpml …☆16Sep 29, 2026Updated last month
- Power series, power serious☆12Apr 21, 2025Updated last year
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- Julia package for Markov chains in continuous time.☆13May 27, 2022Updated 4 years ago
- Population genetic simulations in R☆64Updated this week
- Detects and blacklists paralog RAD loci analyzed in Stacks or ipyrad, based on the McKinney 2017 method (doi:10.1111/1755-0998.12613)☆10Sep 4, 2019Updated 7 years ago
- BayesCode, a Bayesian framework for phylogenetic comparative methods and phylogenetic codon models☆11Apr 30, 2025Updated last year
- A quick workflow to get researchers started with the bioinformatic pipeline used in the Environmental Metagenomics program.☆13Feb 17, 2025Updated last year
- Pipeline for phasing sequence data in polyploids. Designed for target enrichment data, but probably works with other data too.☆12Jun 20, 2024Updated 2 years ago
- A collection of examples on how to use .NET Generic Host with F#☆14Apr 26, 2023Updated 3 years ago
- R functions for conversion of genetic data formats☆12May 17, 2023Updated 3 years ago
- Calculation of pairwise Linkage Disequilibrium (LD) under a probabilistic framework☆54Nov 13, 2023Updated 2 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Binning (Newick) Phylogenetic Trees by Topology☆10Mar 11, 2019Updated 7 years ago
- An issue driven repo open for sharing, discussing and collaborating conference / speaking opportunities☆11Nov 3, 2023Updated 2 years ago
- Bayesian Nonparametric Mixture Models in Julia☆14Oct 25, 2017Updated 9 years ago
- Calculate indel trajectory likelihoods using methods of Miklós, Lunter & Holmes (2004), De Maio (2020), and Holmes (2020)☆14Sep 17, 2022Updated 4 years ago
- FsMcp is an idiomatic F# toolkit for building Model Context Protocol (MCP) servers and clients with type safety, computation expressions,…☆17Sep 5, 2026Updated last month
- Markov chain Monte Carlo with Metropolis-Hasting algorithm☆19Jun 23, 2025Updated last year
- Chromax is a breeding simulator based on JAX.☆10Jun 6, 2025Updated last year