diyabc / abcrangerLinks
ABC random forests for model choice and parameter estimation, pure C++ implementation
☆9Updated 8 months ago
Alternatives and similar repositories for abcranger
Users that are interested in abcranger are comparing it to the libraries listed below
Sorting:
- Phylogenetic inference using Stan☆24Updated 3 months ago
- [mu]tation [s]pectrum [h]istory [i]nference☆25Updated 5 months ago
- Sampling and manipulating genome-wide ancestral recombination graphs (ARGs)☆56Updated 9 years ago
- genotype dimensionality reduction with a VAE☆45Updated 3 months ago
- The integrated Sequentially Markovian Coalescent☆14Updated last month
- Sampling and inference of genealogies with recombination☆30Updated last week
- ☆18Updated last week
- MOran Models for Inference☆9Updated 7 years ago
- A phylogeny dating method using least-squares algorithms and criteria☆27Updated 8 months ago
- Infer the age of ancestral nodes in a tree sequence.☆21Updated 3 weeks ago
- Drawing functions for Demes demographic models☆21Updated 11 months ago
- A reimplementation of a classical PSMC method in python for educational purposes☆15Updated 11 months ago
- Forward-time simulation in Python using fwdpp☆31Updated last month
- Polyploid micro-haplotype assembly using Markov chain Monte Carlo simulation.☆19Updated 9 months ago
- Clustering phylogenetic trees with python☆25Updated 10 months ago
- Fast inference of fine-scale recombination rates based on fused-LASSO☆51Updated 2 months ago
- ☆26Updated 4 years ago
- A versatile simulation engine for stochastic population dynamics models.☆22Updated 2 years ago
- R package for pedigree inference based on SNP data☆26Updated last year
- Tools for inference of the DFE with dadi☆14Updated 4 years ago
- Bayesian Phylogenetic Inference Using Graphical Models and an Interactive Model-Specification Language☆67Updated this week
- Automatically exported from code.google.com/p/macs☆16Updated 5 years ago
- A Julia package for estimating phylogenetic networks from genomic data☆19Updated last year
- PopSim consortium manuscript☆7Updated 5 years ago
- Extra add-ons that may be useful for people using SLiM, but that are not part of the SLiM project itself☆43Updated 2 months ago
- defiNETti is a program for performing Bayesian inference on exchangeable (or permutation-invariant) data via deep learning. In particula…☆20Updated 7 years ago
- Fast and accurate tool for estimating genomic distances between genome-skims☆44Updated last year
- Explore spaces of phylogenetic trees☆29Updated last year
- Two locus likelihoods and ARGs under changing population size☆14Updated 2 months ago
- ☆20Updated 8 months ago