speciationgenomics / speciationgenomics.github.io

Related projects ⓘ

Alternatives and complementary repositories for speciationgenomics.github.io

• tonig-evo / workshop-popgenome
  Tutorial about R package PopGenome
  ☆40Updated 5 years ago
• mennodejong1986 / SambaR
  SambaR: Snp datA Management and Basic Analyses in R
  ☆26Updated 2 weeks ago
• clairemerot / angsd_pipeline
  ☆25Updated last year
• xiaoming-liu / stairway-plot-v2
  The stairway plot is a method for inferring detailed population demographic history using the site frequency spectrum (SFS) from DNA sequ…
  ☆31Updated last year
• mmatschiner / F4
  Assessing confidence in introgression among four populations
  ☆26Updated 3 years ago
• petrikemppainen / LDna
  LDna: an R package to perform linkage disequilibrium network analysis
  ☆30Updated 6 months ago
• nt246 / physalia-lcwgs
  Files for the the Physalia course on Population genomic inference from low-coverage whole-genome sequencing data, Oct 10-13, 2022
  ☆54Updated 2 weeks ago
• shenglin-liu / vcf2sfs
  R functions for generating site frequency spectra (SFS) from a VCF file.
  ☆27Updated 4 years ago
• mfoll / BayeScan
  Detecting natural selection from population-based genetic data
  ☆27Updated 5 years ago
• mfumagalli / ngsPopGen
  Population genetics analyses from NGS data
  ☆25Updated 3 years ago
• esayyari / DiscoVista
  ☆38Updated last year
• miriammiyagi / QuIBL
  Quantifying Introgression via Branch Lengths
  ☆49Updated 2 years ago
• mrmckain / Fast-Plast
  Automated de novo assembly of whole chloroplast genomes.
  ☆44Updated last month
• PhHermann / LDJump
  R Package to Estimate Variable Recombination Rates using Population Genetic Data
  ☆38Updated 4 years ago
• millanek / fineRADstructure
  A package for population structure inference from RAD-seq data
  ☆31Updated 3 years ago
• speciationgenomics / presentations
  Presentations from the course
  ☆36Updated last year
• enormandeau / stacks_workflow
  RADseq workflow using STACKS
  ☆56Updated this week
• carolindahms / TreeMix
  Scripts to analyze data using TreeMix. This pipeline runs TreeMix with bootstrapping, helps choose number of migration events and creates…
  ☆22Updated 8 months ago
• owensgl / haploblocks
  Scripts and resources for the haploblocks manuscript
  ☆14Updated 4 years ago
• kr-colab / diploSHIC
  feature-based deep learning for the identification of selective sweeps
  ☆50Updated 2 months ago
• sjoleary / SNPFILT
  ☆17Updated 6 years ago
• esrud / GONE
  GONE: Scripts, programs and an example data set
  ☆42Updated 10 months ago
• stschiff / msmc-tools
  Tools and Utilities for msmc and msmc2
  ☆45Updated last year
• popgenDK / SATC
  Sex assignment through coverage
  ☆17Updated 8 months ago
• MikkelSchubert / paleomix
  Pipelines and tools for the processing of ancient and modern HTS data.
  ☆43Updated 2 months ago
• simonhmartin / tutorials
  Tutorials on evolutionary genomics
  ☆41Updated 2 years ago
• jessicarick / msmc2_scripts
  MSMC2 Scripts
  ☆23Updated 8 months ago
• thierrygosselin / assigner
  Population assignment analysis using R
  ☆17Updated this week
• joepickrell / pophistory-tutorial
  Tutorial on using popular tools for learning about population history
  ☆49Updated 6 years ago
• ranwez / MACSE_V2_PIPELINES
  This repository provides source code for several pipelines dedicated to the alignment of nucleotide coding sequences that are based on MA…
  ☆32Updated last year