Alternatives and similar repositories for assigner

Users that are interested in assigner are comparing it to the libraries listed below

• millanek / fineRADstructure
  A package for population structure inference from RAD-seq data
  ☆34Updated 4 years ago
• stevemussmann / BayesAss3-SNPs
  Modification of BayesAss 3.0.4 to allow handling of large SNP datasets
  ☆17Updated 3 years ago
• champost / ABLE
  ABLE - Approximate Blockwise Likelihood Estimation
  ☆17Updated 7 years ago
• rystanley / genepopedit
  Simple and flexible manipulation of genomic data.
  ☆16Updated 6 months ago
• pimbongaerts / radseq
  Collection of Python scripts for parsing/analyses of RAD-seq data
  ☆23Updated 7 months ago
• gbradburd / SpaceMix
  ☆30Updated 3 years ago
• bcm-uga / pcadapt
  Performing highly efficient genome scans for local adaptation with R package pcadapt v4
  ☆42Updated 3 months ago
• kristinmlee / dmc
  Distinguishing among modes of convergent adaptation using population genomic data: statistical inference method, extensions, and examples
  ☆13Updated 6 years ago
• Tom-Jenkins / utility_scripts
  Scripts for population genetics analysis
  ☆20Updated 2 years ago
• blackrim / treePL
  Phylogenetic penalized likelihood
  ☆53Updated 4 months ago
• nicocriscuolo / StructuRly
  Comprehensive, detailed and interactive plots for STRUCTURE and ADMIXTURE population analysis
  ☆21Updated 11 months ago
• augusto-garcia / onemap
  Repository created to host the R package OneMap: software for constructing genetic maps in experimental crosses: full-sib, RILs, F2 and b…
  ☆38Updated last year
• sjoleary / SNPFILT
  ☆19Updated 7 years ago
• Rosemeis / fastmixture
  Software for ancestry estimation in unrelated individuals
  ☆20Updated 3 weeks ago
• gbradburd / conStruct
  method for modeling continuous and discrete population genetic structure
  ☆36Updated last year
• ngthomas / microhaplot
  microhaplotype visualizer and analyzer
  ☆20Updated 4 years ago
• nt246 / physalia-lcwgs
  Files for the the Physalia course on Population genomic inference from low-coverage whole-genome sequencing data, Oct 10-13, 2022
  ☆67Updated last week
• timbeissinger / Maize-Teo-Scripts
  ☆17Updated 9 years ago
• devillemereuil / bayescenv
  BayeScEnv is a Fst-based, genome-scan method that uses environmental variables to detect local adaptation.
  ☆18Updated 8 years ago
• LynchLab / MAPGD
  A program for the Maximum-likelihood analysis of population genomic data.
  ☆30Updated 4 years ago
• ANGSD / NgsRelate
  ☆44Updated 7 months ago
• evolgenomics / haplotagging
  Code and binaries related to processing haplotagging data
  ☆15Updated 3 years ago
• simonhmartin / dfs
  D Frequency Spectrum: Signatures of introgression across the allele frequency spectrum
  ☆19Updated 5 years ago
• edgardomortiz / fineRADstructure-tools
  Tools for data conversion and results visualization for fineRADstructure (http://cichlid.gurdon.cam.ac.uk/fineRADstructure.html)
  ☆10Updated 5 years ago
• yangjl / pseudoRef
  Make Pseudo-Reference Genome from VCF/BCF
  ☆14Updated 5 years ago
• StevenMicheletti / poolparty
  Whole-genome bioinformatic pipeline for pooled or individual-based NGS data using bash and R
  ☆21Updated 3 years ago
• popgenmethods / momi2
  Infer demographic history with the Moran model
  ☆48Updated 4 months ago
• mossmatters / phyloscripts
  Helper scripts for processing and visualization of phylogenetics datasets
  ☆30Updated last year
• mailund / admixture_graph
  Module for analysing admixture graphs
  ☆28Updated 7 years ago
• FePhyFoFum / SortaDate
  ☆18Updated 4 years ago