steinmann / peakzillaLinks
Peakzilla is a self-learning algorithm to identify transcription factor binding sites from ChIP-seq data. I would be very happy if you try it and provide me with feedback, so I can improve peakzilla and make you a happier user. Please feel free to send an e-mail to: steinmann.jonas@gmail.com
☆20Updated last year
Alternatives and similar repositories for peakzilla
Users that are interested in peakzilla are comparing it to the libraries listed below
Sorting:
- A tool for Read Multi-Mapper Resolution☆23Updated 8 years ago
- BreakSeq2: Ultrafast and accurate nucleotide-resolution analysis of structural variants☆24Updated 9 years ago
- Improved multi-sample transcript abundance estimates using adaptive priors☆20Updated 6 years ago
- AlignerBoost is a generalized software toolkit for boosting Next-Gen sequencing mapping precision using a Bayesian based mapping quality …☆11Updated 3 years ago
- Stupid Simple Structural Variant View☆25Updated 8 years ago
- Chromatin segmentation in R☆19Updated 7 years ago
- Expectation-Maximization algorithm for Allele-Specific Expression☆21Updated 2 years ago
- ☆12Updated last month
- Ximmer is a system for CNV calling on exome and targeted genomic sequencing☆19Updated 4 months ago
- A program for fast and accurate genome-guided transcripts reconstruction and quantification from RNA-seq (Supporting Pacbio single-end)☆23Updated 4 years ago
- picking up low allelic-fraction, somatic variants from tumor samples☆14Updated 7 years ago
- Simultaneous detection of SNPs and Indels using a 16-genotype probabilistic model☆27Updated last year
- A curated list of awesome clonality and tumor heterogeneity resources☆15Updated 6 years ago
- A program for summarising CpG methylation patterns☆20Updated 8 years ago
- Q ChIP-seq peak caller☆18Updated 11 months ago
- ☆37Updated 4 years ago
- Fast but inaccurate adapter trimmer for Illumina reads☆15Updated 3 years ago
- ☆12Updated 5 years ago
- Calib clusters barcode tagged paired-end reads based on their barcode and sequence similarity.☆39Updated 2 years ago
- Rcount: simple and flexible RNA-Seq read counting☆12Updated 3 years ago
- prioritize effects of variant annotations from VEP, SnpEff, et al.☆34Updated 6 months ago
- An ultra fast and accurate paired-end adapter trimmer that needs no a priori adapter sequences.☆22Updated 4 years ago
- significance testing over interval overlaps☆30Updated 4 years ago
- Enriched Domain Detector for ChIP-seq data☆16Updated 2 years ago
- Making Snakemake workflows into full-fledged command line tools since 1999.☆52Updated 7 years ago
- FermiKit small variant calls for public SGDP samples☆17Updated 8 years ago
- Modeling and correcting fragment sequence bias for RNA-seq☆24Updated last year
- sort genomic data☆35Updated 5 years ago
- ☆10Updated 10 years ago
- fast webservices based query tool for large sets of genomic features☆25Updated last month