Peakzilla is a self-learning algorithm to identify transcription factor binding sites from ChIP-seq data. I would be very happy if you try it and provide me with feedback, so I can improve peakzilla and make you a happier user. Please feel free to send an e-mail to: steinmann.jonas@gmail.com
☆21Aug 18, 2025Updated 7 months ago
Alternatives and similar repositories for peakzilla
Users that are interested in peakzilla are comparing it to the libraries listed below
Sorting:
- Normalization and difference calling for Next Generation Sequencing (NGS) data via joint multinomial modeling.☆11Oct 8, 2021Updated 4 years ago
- Cross-platform GUI desktop application for making biological heatmaps☆19Nov 10, 2022Updated 3 years ago
- Chromatin segmentation in R☆19Feb 4, 2018Updated 8 years ago
- Simple and quick FastQ and FastA tool for file reading and conversion☆17Jul 11, 2014Updated 11 years ago
- Q ChIP-seq peak caller☆18Jul 17, 2024Updated last year
- RNF framework for NGS: simulation of reads, evaluation of mappers, conversion of RNF-compliant data.☆14Nov 10, 2025Updated 4 months ago
- ☆12Jan 21, 2016Updated 10 years ago
- A program for summarising CpG methylation patterns☆20Sep 9, 2016Updated 9 years ago
- A versatile and efficient RNA-Seq read counting tool☆16Mar 30, 2016Updated 9 years ago
- SNAPR: a bioinformatics pipeline for efficient and accurate RNA-seq alignment and analysis☆25Apr 7, 2015Updated 10 years ago
- R package to quickly obtain count vectors from indexed bam files☆15Jun 13, 2025Updated 9 months ago
- pyAffy: Processing raw data from Affymetrix expression microarrays in Python.☆18Dec 6, 2016Updated 9 years ago
- MUltiScale enrIchment Calling for ChIP-Seq Datasets☆23Mar 14, 2019Updated 7 years ago
- Hotspot is a program for identifying genomic regions of local enrichment of short-read sequence tags.☆16Apr 12, 2014Updated 11 years ago
- Enriched Domain Detector for ChIP-seq data☆16Aug 17, 2022Updated 3 years ago
- A fast and efficient short read mapper☆13Nov 7, 2021Updated 4 years ago
- Processing and analysis of data coming from Illumina sequencing machines☆10Updated this week
- A tool for Read Multi-Mapper Resolution☆24Feb 15, 2017Updated 9 years ago
- NGS perl modules☆11Mar 13, 2026Updated last week
- AlignerBoost is a generalized software toolkit for boosting Next-Gen sequencing mapping precision using a Bayesian based mapping quality …☆11Mar 1, 2022Updated 4 years ago
- ChIP-seq DC and QC Pipeline☆36Mar 19, 2021Updated 5 years ago
- A deletion finder through re-aligning the whole soft-clipping read☆12Jul 2, 2016Updated 9 years ago
- gvcf aggregation tool☆12Feb 7, 2018Updated 8 years ago
- RNA-Seq Unified Mapper☆27Sep 9, 2022Updated 3 years ago
- R function to plot high quality, elegant heatmap using 'ggplot2' graphics . Some of the important features of this package are, colorin…☆11Apr 19, 2016Updated 9 years ago
- Applying IDR analysis to Homer peaks.☆15May 8, 2020Updated 5 years ago
- COMETgazer mehylation analysis software suite☆10Jul 21, 2019Updated 6 years ago
- example applications built using bíogo☆18Apr 19, 2021Updated 4 years ago
- Gordon's Text utils Library☆10Apr 11, 2022Updated 3 years ago
- An ultra fast and accurate paired-end adapter trimmer that needs no a priori adapter sequences.☆22Jan 19, 2021Updated 5 years ago
- Rcount: simple and flexible RNA-Seq read counting☆12May 19, 2022Updated 3 years ago
- Long Approximate Matches-based Split Aligner☆13Apr 6, 2017Updated 8 years ago
- Targeted Amplicon Bisulfite Sequencing Analysis Tool☆11May 8, 2019Updated 6 years ago
- Estimation of pairwise distances under a probabilistic framework☆11Aug 11, 2023Updated 2 years ago
- SPP - R package for analysis of ChIP-seq and other functional sequencing data☆43Jul 6, 2021Updated 4 years ago
- Next generation sequencing (NGS/HTS) tools.☆19Jan 25, 2024Updated 2 years ago
- ☆13Jan 8, 2020Updated 6 years ago
- DeeNA Zip (SAM/BAM compression tool)☆13May 25, 2019Updated 6 years ago
- An application to remove PCR duplicates from high throughput sequencing runs.☆11Apr 22, 2018Updated 7 years ago