aryeelab / bisulfite-seq-toolsLinks
Suite of tools to conduct methylation data analysis. Methods from this workspace can be used for alignment and quality control analysis for various protocols including Whole Genom Bisulfite Sequencing (WGBS), Reduced Representation Bisulfite Sequencing (RRBS) and Hybrid Selection Bisulfite Sequencing (HSBS).
☆20Updated 4 years ago
Alternatives and similar repositories for bisulfite-seq-tools
Users that are interested in bisulfite-seq-tools are comparing it to the libraries listed below
Sorting:
- Filtering of PDX samples for mouse derived reads☆28Updated 2 years ago
- Scripts to import your FeatureCounts output into DEXSeq☆33Updated 6 years ago
- Package Homepage: http://bioconductor.org/packages/devel/bioc/html/annotatr.html Bug Reports: https://support.bioconductor.org/p/new/post…☆26Updated 9 months ago
- MAnorm2 for Normalizing and Comparing ChIP-seq Samples☆33Updated 2 years ago
- A tool kit for dissecting cancer evolution from multi-region derived tumor biopsies via somatic mutations☆36Updated 3 years ago
- ☆8Updated 6 years ago
- An R for fast and flexible DNA methylation analysis☆32Updated 10 months ago
- A Spike-in Free ChIP-Seq Normalization Approach for Detecting Global Changes in Histone Modifications☆32Updated 3 years ago
- documentation for trackViewer☆29Updated 5 years ago
- workshop website on readthedocs☆19Updated last month
- CLIP-seq Analysis of Multi-mapped reads☆30Updated 3 years ago
- A neoantigen calling pipeline begins from variants record file (MAF) (Not maintain now)☆29Updated 5 years ago
- Repo for Physalia course Analysis of Single Cell RNA-Seq data☆32Updated 5 years ago
- Machine learning algorithm to predict biological pathway relationships based on functional genomics networks☆20Updated 6 years ago
- snakemake workflow for post-processing scATACseq data☆21Updated 4 years ago
- ☆34Updated 5 years ago
- Fork from https://bitbucket.org/mcgranahanlab/lohhla/src, modified for MSKCC needs☆31Updated last year
- R package wrapping bedtools☆41Updated 2 months ago
- Model-based subclonal deconvolution from bulk sequencing.☆33Updated 5 months ago
- processes GoT amplicon data and generates a table of metrics☆29Updated 2 years ago
- OUTRIDER: OUTlier in RNA-seq fInDER is an R-based framework to find aberrantly expressed genes in RNA-seq data☆53Updated last week
- Bioconductor package esATAC: an Easy-to-use Systematic pipeline for ATAC-seq data analysis☆23Updated 2 years ago
- Main repository for Drews et al. (Nature, 2022)☆41Updated last year
- ChIP-seq DC and QC Pipeline☆34Updated 4 years ago
- Snakemake pipeline for running MAJIQ☆23Updated last year
- A toolkit for working with ATAC-seq data.☆24Updated 11 months ago
- An R package to analyze single-cell V(D)J data☆28Updated last year
- Public repository containing research code for the TCGA PanCanAtlas Splicing project☆41Updated 4 years ago
- a tool for summarizing and integrating gene-set analysis results☆16Updated 9 months ago
- Algorithm for detecting alternative splicing in a population of single cells. See details in Welch et al., Nucleic Acids Research 2016: h…☆21Updated 8 years ago