aryeelab / bisulfite-seq-toolsLinks
Suite of tools to conduct methylation data analysis. Methods from this workspace can be used for alignment and quality control analysis for various protocols including Whole Genom Bisulfite Sequencing (WGBS), Reduced Representation Bisulfite Sequencing (RRBS) and Hybrid Selection Bisulfite Sequencing (HSBS).
☆20Updated 4 years ago
Alternatives and similar repositories for bisulfite-seq-tools
Users that are interested in bisulfite-seq-tools are comparing it to the libraries listed below
Sorting:
- Filtering of PDX samples for mouse derived reads☆28Updated 2 years ago
- Package Homepage: http://bioconductor.org/packages/devel/bioc/html/annotatr.html Bug Reports: https://support.bioconductor.org/p/new/post…☆27Updated 3 weeks ago
- An R for fast and flexible DNA methylation analysis☆31Updated last week
- Disambiguation algorithm for reads aligned to human and mouse genomes using Tophat or BWA mem☆31Updated 7 years ago
- A tool kit for dissecting cancer evolution from multi-region derived tumor biopsies via somatic mutations☆36Updated 3 years ago
- Algorithm for detecting alternative splicing in a population of single cells. See details in Welch et al., Nucleic Acids Research 2016: h…☆22Updated 9 years ago
- A neoantigen calling pipeline begins from variants record file (MAF) (Not maintain now)☆29Updated 5 years ago
- MAnorm2 for Normalizing and Comparing ChIP-seq Samples☆32Updated 2 years ago
- R package for reading in & working with NucleoATAC outputs☆26Updated 6 years ago
- CNV analysis workflow code for the manuscript☆13Updated 5 years ago
- Combined mutation recurrence and functional impact to identify coding and non-coding cancer drivers☆15Updated 6 years ago
- Interactive R package to quantify, analyse and visualise alternative splicing☆37Updated last week
- Model-based subclonal deconvolution from bulk sequencing.☆33Updated 6 months ago
- Detecting intron retention from RNA-Seq experiments☆55Updated last year
- A tool for annotation-free differential analysis of tissue-specific pre-mRNA alternative splicing patterns☆28Updated 2 years ago
- ☆44Updated 6 years ago
- ChIP-seq DC and QC Pipeline☆35Updated 4 years ago
- ☆9Updated 6 years ago
- Tutorials covering various topics in genomic data analysis.☆17Updated 6 years ago
- ☆40Updated 7 years ago
- Code accompanying The Evolutionary history of 2,658 cancers☆46Updated 4 years ago
- simplified cellranger for long-read data☆19Updated 3 months ago
- Software for preprocessing, filtering, alignment, and reporting of smallRNA-seq datasets☆23Updated 2 years ago
- Define regions in the genome☆32Updated 3 years ago
- An R package for studying mutational signatures and structural variant signatures along clonal evolution in cancer.☆71Updated last year
- A Package For Predicting The Disruptiveness Of Single Nucleotide Polymorphisms On Transcription Factor Binding Sites.☆29Updated 11 months ago
- Sigflow: Streamline Analysis Workflows for Mutational Signatures, https://github.com/ShixiangWang/sigflow/pkgs/container/sigflow☆27Updated 9 months ago
- Dirichlet Process based methods for subclonal reconstruction of tumours☆29Updated 4 months ago
- TIMEOR: Trajectory Inference and Mechanism Exploration with Omics Data in R☆17Updated 3 years ago
- ☆15Updated 2 years ago