Suite of tools to conduct methylation data analysis. Methods from this workspace can be used for alignment and quality control analysis for various protocols including Whole Genom Bisulfite Sequencing (WGBS), Reduced Representation Bisulfite Sequencing (RRBS) and Hybrid Selection Bisulfite Sequencing (HSBS).
☆20Nov 19, 2020Updated 5 years ago
Alternatives and similar repositories for bisulfite-seq-tools
Users that are interested in bisulfite-seq-tools are comparing it to the libraries listed below
Sorting:
- COMETgazer mehylation analysis software suite☆10Jul 21, 2019Updated 6 years ago
- wg-blimp: an end-to-end analysis pipeline for whole genome bisulfite sequencing data☆29Jul 31, 2022Updated 3 years ago
- Python package with CLI for the analysis of single cell methylation data.☆19Oct 29, 2024Updated last year
- Cluster-based analysis of CpG methylation☆13Jan 11, 2024Updated 2 years ago
- An R for fast and flexible DNA methylation analysis☆35Dec 9, 2025Updated 2 months ago
- MONOD2 is a toolkit for methylation haplotype analysis of bisulfite sequencing data☆40Feb 20, 2019Updated 7 years ago
- Impute DNA methylation from WGBS data.☆11Apr 23, 2019Updated 6 years ago
- Modeling Spatio-temporal Dynamics of Chromatin Marks☆12Aug 2, 2021Updated 4 years ago
- A computational method for inferring the cancer cell fraction of tumour structural variation from whole-genome sequencing data.☆42Aug 21, 2025Updated 6 months ago
- Single-cell Bisulfite Sequencing Data Mapping☆12May 19, 2021Updated 4 years ago
- ☆13Jan 18, 2017Updated 9 years ago
- Code for reproducing results from the paper "RNA velocity and protein acceleration from single-cell multiomics experiments."☆11Feb 1, 2020Updated 6 years ago
- ENCODE whole-genome bisulfite sequencing (WGBS) pipeline☆32Feb 15, 2022Updated 4 years ago
- Multi-sample cancer phylogeny reconstruction☆36Oct 19, 2017Updated 8 years ago
- ☆15Nov 9, 2018Updated 7 years ago
- TFregulomeR reveals transcription factors’ context-specific features and functions☆15Apr 18, 2022Updated 3 years ago
- Devel repository for bsseq☆39Feb 6, 2026Updated 3 weeks ago
- Calib clusters barcode tagged paired-end reads based on their barcode and sequence similarity.☆40Jun 6, 2023Updated 2 years ago
- Code and data from Koche et al. Extrachromosomal circular DNA drives oncogenic genome remodeling in neuroblastoma (2020)☆15Nov 5, 2020Updated 5 years ago
- Computational identification of targets for CAR-T cell therapy in AML☆21Dec 25, 2022Updated 3 years ago
- Important papers relating to the biology of cell free DNA☆19Sep 21, 2018Updated 7 years ago
- Repo that aids in the detection of microsatellite instabilities (MSI) from sequencing data☆21Apr 22, 2024Updated last year
- ☆16Jan 2, 2024Updated 2 years ago
- Independent Component Analysis decipher functional modules for better cell clustering and annotation☆17Apr 4, 2022Updated 3 years ago
- R vignettes for processing BUS format single-cell RNA-seq files☆21Feb 8, 2020Updated 6 years ago
- Creates a target specific exome_full192.coverage.txt file required by MutSig☆21Sep 15, 2021Updated 4 years ago
- Minimal implementation of Deep Learning models☆31Feb 10, 2026Updated 3 weeks ago
- Tools for analyzing DNA methylation data☆44Feb 15, 2026Updated 2 weeks ago
- Decomposition of heterogeneous DNA methylomes☆23Jul 10, 2024Updated last year
- Reconstructs complex variation using Bionano optical mapping data and breakpoint graph data☆19Nov 13, 2023Updated 2 years ago
- A Weighted Exact Test for Mutually Exclusive Mutations in Cancer☆21Sep 30, 2018Updated 7 years ago
- ☆54Mar 9, 2022Updated 3 years ago
- WGBS/NOMe-seq Data Processing & Differential Methylation Analysis☆147May 20, 2023Updated 2 years ago
- knowledge-based genotyping of cancer hotspots from the tumor BAM files☆21Dec 14, 2021Updated 4 years ago
- ☆25Jan 18, 2022Updated 4 years ago
- Reproducibility workflow for Gigante et al., 2018: Using long-read sequencing to detect imprinted DNA methylation☆23Mar 4, 2019Updated 7 years ago
- Assign gene names to regions in a BED file☆25May 3, 2023Updated 2 years ago
- Computable build reports, package metadata, and download stats from the Bioconductor project☆22Feb 3, 2026Updated last month
- Dynamical systems methods for RNA velocity analysis☆24May 19, 2021Updated 4 years ago