MWSchmid / Rcount
Rcount: simple and flexible RNA-Seq read counting
☆12Updated 2 years ago
Alternatives and similar repositories for Rcount:
Users that are interested in Rcount are comparing it to the libraries listed below
- Chromatin segmentation in R☆19Updated 7 years ago
- Q ChIP-seq peak caller☆18Updated 8 months ago
- Enriched Domain Detector for ChIP-seq data☆16Updated 2 years ago
- Scripts and software supplement for "Gene-level differential analysis at transcript-level resolution" by Yi, Pimentel, Bray and Pachter☆19Updated 7 years ago
- Transcript assembly tool using multiple change-point inference to improve 3'UTR annotation☆13Updated 2 years ago
- R package for visualizing complex and multi-track 1D and 2D genomic data in GenomicRanges framework☆16Updated 2 months ago
- A tool for Read Multi-Mapper Resolution☆23Updated 8 years ago
- R package for Methylation-based Inference of Regulatory Activity☆12Updated 4 years ago
- A small R package to make sequencing read coverage plots in R.☆37Updated 2 years ago
- Applying IDR analysis to Homer peaks.☆15Updated 4 years ago
- Code for differential splicing comparison paper (Soneson, Matthes, et al.)☆20Updated 8 years ago
- A program for summarising CpG methylation patterns☆20Updated 8 years ago
- ☆12Updated 5 years ago
- Relative Abundance of Transcripts: An R package for the detection of Differential Transcript isoform Usage.☆32Updated 2 years ago
- ☆21Updated 2 weeks ago
- Genomic plot in trellis layout☆39Updated last year
- Improved multi-sample transcript abundance estimates using adaptive priors☆20Updated 6 years ago
- a peak-calling and differential analysis tool for replicated ChIP-Seq data☆37Updated 2 years ago
- A hierarchical multiscale model for inferring transcription factor binding from chromatin accessibility data.☆26Updated 8 years ago
- MSKCC Reis-Filho Lab pipeline thingy☆16Updated 7 months ago
- Python package and routines for merging VCF files☆29Updated 3 years ago
- Expectation-Maximization algorithm for Allele-Specific Expression☆21Updated last year
- A Package For Predicting The Disruptiveness Of Single Nucleotide Polymorphisms On Transcription Factor Binding Sites.☆28Updated 7 months ago
- A set of tools to annotate VCF files with expression and readcount data☆29Updated 3 weeks ago
- Ritornello is a high fidelity control free ChIP-seq peak calling algorithm☆13Updated 6 years ago
- Software to assemble contigs/scaffolds into chromosomes using Hi-C data☆28Updated 6 months ago
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆42Updated 2 years ago
- DRAGEN Tumor/Normal workflow post-processing☆22Updated last year
- Filter and prioritize fusion calls☆20Updated 6 months ago
- FermiKit small variant calls for public SGDP samples☆17Updated 8 years ago