MWSchmid / RcountLinks
Rcount: simple and flexible RNA-Seq read counting
☆12Updated 3 years ago
Alternatives and similar repositories for Rcount
Users that are interested in Rcount are comparing it to the libraries listed below
Sorting:
- Scripts and software supplement for "Gene-level differential analysis at transcript-level resolution" by Yi, Pimentel, Bray and Pachter☆19Updated 7 years ago
- ☆12Updated 5 years ago
- R package for Methylation-based Inference of Regulatory Activity☆13Updated 5 years ago
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆42Updated 3 years ago
- Chromatin segmentation in R☆19Updated 7 years ago
- A tool for Read Multi-Mapper Resolution☆24Updated 8 years ago
- A program for summarising CpG methylation patterns☆20Updated 9 years ago
- Expectation-Maximization algorithm for Allele-Specific Expression☆21Updated 2 years ago
- novoBreak: local assembly for breakpoint detection in cancer genomes☆25Updated 7 years ago
- A set of tools to annotate VCF files with expression and readcount data☆29Updated 6 months ago
- DRAGEN Tumor/Normal workflow post-processing☆22Updated 2 years ago
- Code for differential splicing comparison paper (Soneson, Matthes, et al.)☆20Updated 9 years ago
- Enriched Domain Detector for ChIP-seq data☆16Updated 3 years ago
- Mapped QC analysis program☆44Updated 7 years ago
- Transcript assembly tool using multiple change-point inference to improve 3'UTR annotation☆13Updated 2 years ago
- Population-based detection of structural variation from High-Throughput Sequencing.☆32Updated 3 years ago
- Q ChIP-seq peak caller☆18Updated last year
- COMETgazer mehylation analysis software suite☆10Updated 6 years ago
- Callable Cancer Loci - assessment of sequencing coverage for actionable and pathogenic loci in cancer☆21Updated 4 years ago
- Flexible Bayesian inference of mutational signatures☆36Updated 2 years ago
- a Shiny/R application to view and annotate copy number variations☆28Updated 2 years ago
- A small R package to make sequencing read coverage plots in R.☆39Updated 3 years ago
- Tools to handle reads sequenced with unique molecular identifiers (UMIs).☆30Updated 8 years ago
- Applying IDR analysis to Homer peaks.☆15Updated 5 years ago
- Prepare Sailfish and Salmon output for downstream analysis☆42Updated 6 years ago
- (DEPRECATED) epic: diffuse domain ChIP-Seq caller based on SICER☆31Updated 6 years ago
- Relative Abundance of Transcripts: An R package for the detection of Differential Transcript isoform Usage.☆34Updated 3 years ago
- v2.x of the microassembly based somatic variant caller☆23Updated 2 months ago
- Sashimi plots for RNA-seq data using detected transcripts☆29Updated 6 months ago
- Genomic plot in trellis layout☆41Updated last year