gdevailly / HeatStarSeq_ghLinks
A R/shiny web application to browse and compare public RNA-seq / ChIP-seq / CAGE datasets
☆18Updated 4 years ago
Alternatives and similar repositories for HeatStarSeq_gh
Users that are interested in HeatStarSeq_gh are comparing it to the libraries listed below
Sorting:
- Mapped QC analysis program☆44Updated 7 years ago
- Deprecated : Use https://github.com/drpowell/degust☆44Updated 8 years ago
- RNA-seq Viewer Team at the NCBI-assisted Boston Genomics Hackathon☆37Updated 7 years ago
- structure detection program☆17Updated 6 months ago
- Run Picard on BAM files and collate 90 metrics into one file.☆41Updated 7 years ago
- Interactive Visual Analysis of differential gene expression test results☆22Updated 8 years ago
- QC3, a quality control tool designed for DNA sequencing data for raw data, alignment, and variant calling.☆32Updated 9 years ago
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆42Updated 3 years ago
- SiNVICT: Ultra-Sensitive Detection of Single Nucleotide Variants and Indels in Circulating Tumour DNA☆27Updated 4 years ago
- CLAMMS is a scalable tool for detecting common and rare copy number variants from whole-exome sequencing data.☆29Updated 4 years ago
- Automated human exome/genome variants detection from FASTQ files☆22Updated 3 years ago
- myVCF: a web-based platform for target and exome mutations data management☆20Updated 4 years ago
- A program for summarising CpG methylation patterns☆20Updated 8 years ago
- ☆18Updated 6 years ago
- Tools to handle reads sequenced with unique molecular identifiers (UMIs).☆30Updated 7 years ago
- ☆10Updated 8 years ago
- Q ChIP-seq peak caller☆18Updated 10 months ago
- a peak-calling and differential analysis tool for replicated ChIP-Seq data☆37Updated 3 years ago
- Filters for false-positive mutation calls in NGS☆30Updated 6 years ago
- The Genome U-Plot is a JavaScript tool to visualize chromosomal abnormalities in the Human Genome using a U-shape layout.☆32Updated 2 years ago
- smCounter: a versatile UMI-aware variant caller to detect both somatic and germline SNVs and indels. Published in article "Detecting very…☆20Updated 6 years ago
- Preprocessing tools for unique molecular index (UMI) sequencing reads☆31Updated 2 years ago
- Snakemake based pipeline for RNA-Seq analysis☆31Updated 5 years ago
- Fork of https://code.google.com/p/ngs-analysis☆18Updated 11 years ago
- Tool for RNA-Seq analysis.☆39Updated 3 years ago
- Genomes on the Cloud, Mapping & Variant Calling Pipelines☆34Updated 8 years ago
- Code for differential splicing comparison paper (Soneson, Matthes, et al.)☆20Updated 8 years ago
- A method to identify structural variation from sequencing data in target regions☆31Updated 4 years ago
- DNA copy number detection from off-target sequence data☆32Updated 7 years ago
- highly-efficient & lightweight mutation signature matrix aggregation☆19Updated 3 years ago