gdevailly / HeatStarSeq_ghLinks
A R/shiny web application to browse and compare public RNA-seq / ChIP-seq / CAGE datasets
☆18Updated 5 years ago
Alternatives and similar repositories for HeatStarSeq_gh
Users that are interested in HeatStarSeq_gh are comparing it to the libraries listed below
Sorting:
- Scripts and software supplement for "Gene-level differential analysis at transcript-level resolution" by Yi, Pimentel, Bray and Pachter☆19Updated 7 years ago
- Provides Quality Control of sequencing samples by deducing if there is batch effect and adjusts for it.☆35Updated 2 years ago
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆42Updated 3 years ago
- JAMM Peak Finder for Sequencing Datasets☆30Updated 5 years ago
- Tools to handle reads sequenced with unique molecular identifiers (UMIs).☆30Updated 8 years ago
- gnomAD browser pre-ASHG 2018☆33Updated 5 years ago
- Filters for false-positive mutation calls in NGS☆34Updated 6 years ago
- Tool for RNA-Seq analysis.☆39Updated 3 years ago
- DRAGEN Tumor/Normal workflow post-processing☆25Updated 2 years ago
- ☆10Updated 10 years ago
- Method for Identifying Novel Transcripts and Isoforms using Equivalence classes, in cancer and rare disease.☆37Updated last year
- Prepare Sailfish and Salmon output for downstream analysis☆42Updated 6 years ago
- Filter and prioritize fusion calls☆20Updated last year
- RNA-seq Viewer Team at the NCBI-assisted Boston Genomics Hackathon☆37Updated 8 years ago
- Assembly of RNA reads to determine the effect of a cancer mutation on protein sequence☆25Updated last year
- Full-spectrum copy number variation detection by high-throughput DNA sequencing☆40Updated 4 years ago
- Analysis from kallisto paper☆32Updated 9 years ago
- Interactive R package to quantify, analyse and visualise alternative splicing☆37Updated last week
- Run Picard on BAM files and collate 90 metrics into one file.☆40Updated 8 years ago
- Code for differential splicing comparison paper (Soneson, Matthes, et al.)☆20Updated 9 years ago
- Expectation-Maximization algorithm for Allele-Specific Expression☆21Updated 2 years ago
- Tools for visualizing genomics data☆69Updated 4 years ago
- An R Package based on JavaScript libraries for Visualization of Interactive Circos Plot☆28Updated 3 years ago
- Population-based detection of structural variation from High-Throughput Sequencing.☆33Updated 3 years ago
- Parse samtools pileup file to get how many bases and what kind of bases are called☆14Updated last year
- Chromatin segmentation in R☆19Updated 7 years ago
- Parse TF motifs from public databases, read into R, and scan using 'rtfbs'.☆23Updated 7 years ago
- COMETgazer mehylation analysis software suite☆10Updated 6 years ago
- A tool for Read Multi-Mapper Resolution☆24Updated 8 years ago
- ☆33Updated 3 years ago