gdevailly / HeatStarSeq_ghLinks
A R/shiny web application to browse and compare public RNA-seq / ChIP-seq / CAGE datasets
☆18Updated 5 years ago
Alternatives and similar repositories for HeatStarSeq_gh
Users that are interested in HeatStarSeq_gh are comparing it to the libraries listed below
Sorting:
- Provides Quality Control of sequencing samples by deducing if there is batch effect and adjusts for it.☆35Updated 2 years ago
- Scripts and software supplement for "Gene-level differential analysis at transcript-level resolution" by Yi, Pimentel, Bray and Pachter☆19Updated 7 years ago
- JAMM Peak Finder for Sequencing Datasets☆29Updated 5 years ago
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆42Updated 3 years ago
- Parse samtools pileup file to get how many bases and what kind of bases are called☆14Updated last year
- Tool for RNA-Seq analysis.☆39Updated 3 years ago
- Prepare Sailfish and Salmon output for downstream analysis☆42Updated 6 years ago
- Parse TF motifs from public databases, read into R, and scan using 'rtfbs'.☆23Updated 6 years ago
- ☆10Updated 10 years ago
- Make rapid visualizations of RNA-seq data in R☆19Updated 6 years ago
- Expectation-Maximization algorithm for Allele-Specific Expression☆21Updated 2 years ago
- Interactive R package to quantify, analyse and visualise alternative splicing☆37Updated this week
- Tools to handle reads sequenced with unique molecular identifiers (UMIs).☆30Updated 8 years ago
- ☆23Updated this week
- RNA-seq Viewer Team at the NCBI-assisted Boston Genomics Hackathon☆37Updated 8 years ago
- 📊Evaluating, filtering, comparing, and visualising VCF☆28Updated 2 years ago
- a Shiny/R application to view and annotate copy number variations☆28Updated 2 years ago
- Modeling and correcting fragment sequence bias for RNA-seq☆24Updated last year
- Flexible Bayesian inference of mutational signatures☆36Updated 2 years ago
- Simultaneous detection of SNPs and Indels using a 16-genotype probabilistic model☆27Updated last year
- Method for Identifying Novel Transcripts and Isoforms using Equivalence classes, in cancer and rare disease.☆36Updated last year
- Paired Replicate Analysis of Allelic Differential Splicing Events☆12Updated 2 years ago
- deepStats: a stastitical toolbox for deeptools and genomic signals☆34Updated 4 years ago
- Tools for visualizing genomics data☆69Updated 3 years ago
- An interactive learning resource for next-generation sequencing (NGS) techniques☆29Updated 6 years ago
- AnaLysis routines for ePigenomicS data - 🏫 Bioconductor project☆16Updated 2 years ago
- Filters for false-positive mutation calls in NGS☆34Updated 6 years ago
- 📊 An R package of RNA-seq workflow☆15Updated 3 years ago
- Mapped QC analysis program☆44Updated 7 years ago
- Genomic data interpretation and visualization Workshop☆21Updated last month