lamortenera / bamsignals
R package to quickly obtain count vectors from indexed bam files
☆15Updated 3 years ago
Alternatives and similar repositories for bamsignals:
Users that are interested in bamsignals are comparing it to the libraries listed below
- R Interface to the NCBI SRA metadata☆23Updated 6 years ago
- TOP results by CONfident efFECT Sizes.☆14Updated 2 months ago
- Improved multi-sample transcript abundance estimates using adaptive priors☆20Updated 6 years ago
- Interactive table from gemini output☆10Updated 5 years ago
- Converts 'MultiQC' Reports into Tidy Data Frames☆18Updated 10 months ago
- RNA-seq quantifications: gene expression responses to human rhinovirus infection for 6 asthmatic and 6 non-asthmatic donors (SRP046226)☆19Updated 7 years ago
- Machine learning use cases for teaching☆13Updated 7 years ago
- Benchmarks for RNA-seq quantification pipelines☆8Updated 4 years ago
- Precursor to SnakeChunks, see https://github.com/SnakeChunks/SnakeChunks. This project has moved and will no longer be edited here.☆11Updated 7 years ago
- Allele frequency filter app☆14Updated 2 years ago
- Algorithm to implement Fraction and Allelic Copy number Estimate from Tumor/normal Sequencing using unmatched normal sample(s) for log ra…☆11Updated last year
- Accurate, Lightweight Clustering of de novo Transcriptomes using Fragment Equivalence Classes☆31Updated 8 months ago
- Modeling and correcting fragment sequence bias for RNA-seq☆24Updated 8 months ago
- Mostly deprecated in favor of : https://github.com/hbc/bcbioRNASeq. Quality control, differential gene/transcript expression and pathway …☆24Updated 7 years ago
- A program for fast and accurate genome-guided transcripts reconstruction and quantification from RNA-seq (Supporting Pacbio single-end)☆23Updated 3 years ago
- RNA-seq for Mendelian disease diagnostics: A hands-on tutorial through bioinformatic tools and workflows☆17Updated 2 years ago
- Genomic plot in trellis layout☆39Updated 11 months ago
- ☆12Updated 5 years ago
- R function to plot high quality, elegant heatmap using 'ggplot2' graphics . Some of the important features of this package are, colorin…☆11Updated 8 years ago
- DRAGEN Tumor/Normal workflow post-processing☆22Updated last year
- Ximmer is a system for CNV calling on exome and targeted genomic sequencing☆19Updated last week
- Normalization and difference calling for Next Generation Sequencing (NGS) data via joint multinomial modeling.☆11Updated 3 years ago
- This repository contains the code to run the ASCETS arm-level copy number events caller for targeted sequencing data. ASCETS produces arm…☆15Updated last year
- Exhaustive capture of biological variation in RNA-seq data through k-mer decomposition.☆15Updated 6 years ago
- Chromatin segmentation in R☆19Updated 7 years ago
- ☆18Updated 9 years ago
- Color DNA/RNA bases in terminal output☆20Updated 7 years ago
- integrative pathway analysis with modern PCA methodology and gene selection☆11Updated last year
- AnaLysis routines for ePigenomicS data - 🏫 Bioconductor project☆16Updated last year
- Rcount: simple and flexible RNA-Seq read counting☆12Updated 2 years ago