lamortenera / bamsignalsLinks
R package to quickly obtain count vectors from indexed bam files
☆15Updated 7 months ago
Alternatives and similar repositories for bamsignals
Users that are interested in bamsignals are comparing it to the libraries listed below
Sorting:
- TOP results by CONfident efFECT Sizes.☆15Updated last year
- Improved multi-sample transcript abundance estimates using adaptive priors☆20Updated 7 years ago
- R package for Enrichment Depletion Logos (EDLogos) and String Logos☆27Updated 7 years ago
- R Interface to the NCBI SRA metadata☆23Updated 7 years ago
- Modeling and correcting fragment sequence bias for RNA-seq☆24Updated last year
- Genomic plot in trellis layout☆42Updated last year
- Data management of large-scale whole-genome sequence variant calls using GDS files (Development version only)☆46Updated 2 weeks ago
- Precursor to SnakeChunks, see https://github.com/SnakeChunks/SnakeChunks. This project has moved and will no longer be edited here.☆11Updated 8 years ago
- Query sequence data (VCF/BCF1/BCF2, Tabix, BGEN, PLINK) in R☆32Updated 3 months ago
- Rapid and robust analysis of RNA-Seq experiments.☆32Updated 9 years ago
- Converts 'MultiQC' Reports into Tidy Data Frames☆19Updated last year
- ☆10Updated 6 years ago
- Scripts for reproducing analyses of large RNA-seq datasets☆15Updated 6 years ago
- A small R package to make sequencing read coverage plots in R.☆40Updated 3 weeks ago
- RNA-seq quantifications: gene expression responses to human rhinovirus infection for 6 asthmatic and 6 non-asthmatic donors (SRP046226)☆19Updated 8 years ago
- Examples of kallisto + sleuth☆11Updated 8 years ago
- Expectation-Maximization algorithm for Allele-Specific Expression☆21Updated 2 years ago
- R package providing Variance Stabilizing Transformations appropriate for RNA-Seq data☆21Updated 7 months ago
- An R Bioconductor package providing interactive connections to igv.js (the Integrative Genomics Viewer) in a web browser☆45Updated last month
- Mostly deprecated in favor of : https://github.com/hbc/bcbioRNASeq. Quality control, differential gene/transcript expression and pathway …☆24Updated 8 years ago
- Toolkit for QTL mapping and meta-analysis.☆17Updated 3 years ago
- zero-inflated negative binomial gene expression in R☆20Updated 7 years ago
- BigWig manpulation tools using libBigWig and htslib☆30Updated last year
- Chromatin segmentation in R☆19Updated 7 years ago
- Create a cromphensive report of DEG list coming from any analysis of RNAseq data☆27Updated 3 months ago
- AnaLysis routines for ePigenomicS data - 🏫 Bioconductor project☆16Updated 2 years ago
- Callable Cancer Loci - assessment of sequencing coverage for actionable and pathogenic loci in cancer☆21Updated 5 years ago
- ☆22Updated 9 years ago
- R package to organise and standardise your genomic variant calls obtained with different callers.☆11Updated 6 years ago
- R function to plot high quality, elegant heatmap using 'ggplot2' graphics . Some of the important features of this package are, colorin…☆11Updated 9 years ago