lamortenera / bamsignalsLinks
R package to quickly obtain count vectors from indexed bam files
☆15Updated 3 months ago
Alternatives and similar repositories for bamsignals
Users that are interested in bamsignals are comparing it to the libraries listed below
Sorting:
- R package for Enrichment Depletion Logos (EDLogos) and String Logos☆27Updated 6 years ago
- Improved multi-sample transcript abundance estimates using adaptive priors☆20Updated 6 years ago
- Rapid and robust analysis of RNA-Seq experiments.☆32Updated 9 years ago
- R Interface to the NCBI SRA metadata☆23Updated 6 years ago
- Modeling and correcting fragment sequence bias for RNA-seq☆24Updated last year
- Genomic plot in trellis layout☆41Updated last year
- Converts 'MultiQC' Reports into Tidy Data Frames☆18Updated last year
- TOP results by CONfident efFECT Sizes.☆14Updated 9 months ago
- RNA-seq quantifications: gene expression responses to human rhinovirus infection for 6 asthmatic and 6 non-asthmatic donors (SRP046226)☆19Updated 7 years ago
- Expectation-Maximization algorithm for Allele-Specific Expression☆21Updated 2 years ago
- Data management of large-scale whole-genome sequence variant calls using GDS files (Development version only)☆46Updated this week
- ☆10Updated 6 years ago
- A tool to examine duplicate read characteristics in a BAM file☆12Updated 7 years ago
- zero-inflated negative binomial gene expression in R☆20Updated 7 years ago
- AnaLysis routines for ePigenomicS data - 🏫 Bioconductor project☆16Updated 2 years ago
- Precursor to SnakeChunks, see https://github.com/SnakeChunks/SnakeChunks. This project has moved and will no longer be edited here.☆11Updated 8 years ago
- integrative pathway analysis with modern PCA methodology and gene selection☆11Updated 2 years ago
- An R Bioconductor package providing interactive connections to igv.js (the Integrative Genomics Viewer) in a web browser☆46Updated 10 months ago
- ☆18Updated 9 years ago
- BigWig manpulation tools using libBigWig and htslib☆29Updated last year
- R package providing Variance Stabilizing Transformations appropriate for RNA-Seq data☆21Updated 3 months ago
- Allele frequency filter app☆14Updated 3 years ago
- Query sequence data (VCF/BCF1/BCF2, Tabix, BGEN, PLINK) in R☆31Updated 11 months ago
- Chromatin segmentation in R☆19Updated 7 years ago
- Normalization and difference calling for Next Generation Sequencing (NGS) data via joint multinomial modeling.☆11Updated 3 years ago
- Interactive table from gemini output☆10Updated 6 years ago
- Mostly deprecated in favor of : https://github.com/hbc/bcbioRNASeq. Quality control, differential gene/transcript expression and pathway …☆24Updated 7 years ago
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆42Updated 3 years ago
- Create a cromphensive report of DEG list coming from any analysis of RNAseq data☆26Updated last year
- Toolkit for QTL mapping and meta-analysis.☆17Updated 3 years ago