wtsi-npg / npg_seq_pipelineLinks
Processing and analysis of data coming from Illumina sequencing machines
☆10Updated 2 weeks ago
Alternatives and similar repositories for npg_seq_pipeline
Users that are interested in npg_seq_pipeline are comparing it to the libraries listed below
Sorting:
- novoBreak: local assembly for breakpoint detection in cancer genomes☆25Updated 7 years ago
- Package Homepage: http://bioconductor.org/packages/devel/bioc/html/DRIMSeq.html Bug Reports: https://support.bioconductor.org/p/new/post/…☆12Updated 5 years ago
- Population-based detection of structural variation from High-Throughput Sequencing.☆33Updated 3 years ago
- v2.x of the microassembly based somatic variant caller☆23Updated 4 months ago
- A set of tools to annotate VCF files with expression and readcount data☆29Updated 9 months ago
- Reproducibility workflow for Gigante et al., 2018: Using long-read sequencing to detect imprinted DNA methylation☆23Updated 6 years ago
- fastq quality assessment and filtering tool☆18Updated 3 years ago
- ☆21Updated last year
- a Shiny/R application to view and annotate copy number variations☆28Updated 2 years ago
- R API for browsing, analyzing, and manipulating reference-aligned genome graphs in a GenomicRanges framework☆41Updated this week
- MapCaller – An efficient and versatile approach for short-read alignment and variant detection in high-throughput sequenced genomes☆30Updated 4 years ago
- Integrative analysis of complex structural variants☆22Updated 5 years ago
- Reducing reference bias using multiple population reference genomes☆34Updated last year
- Functions to compare a SV call sets against a truth set.☆30Updated 5 months ago
- ☆51Updated 6 years ago
- Ximmer is a system for CNV calling on exome and targeted genomic sequencing☆19Updated last month
- Accurate, Lightweight Clustering of de novo Transcriptomes using Fragment Equivalence Classes☆31Updated last year
- Telomerecat: The telomere computational analysis tool☆21Updated 4 years ago
- Two pass alignment for long reads☆22Updated 4 years ago
- Runs a combination of tools to generate structural variant calls on short-read whole-genome sequencing data☆22Updated 4 years ago
- Pipeline for structural variant image curation and analysis.☆49Updated 4 years ago
- The R package "sarlacc" contains a pipeline to analyse nanopore sequencing data. It trims adapter sequences, retrieves optional UMI's, cl…☆15Updated 6 years ago
- A Framework to call Structural Variants from NGS based datasets☆22Updated 7 years ago
- A command line tool to compute mapping statistics from a BAM file☆25Updated 3 years ago
- A program for summarising CpG methylation patterns☆20Updated 9 years ago
- Fast in-silico normalization algorithm for NGS data☆23Updated 4 years ago
- Structural Variation and fusion detection using targeted sequencing data from circulating cell free DNA☆29Updated last year
- Unfazed by genomic variant phasing☆27Updated last year
- Immuological gene typing and annotation for genome assembly☆38Updated 8 months ago
- Copy Number Variation Detection In Next-generation sequencing Gene panels was designed for small (single-exon) copy number variation (CNV…☆21Updated 5 years ago