wtsi-npg / npg_seq_pipelineLinks
Processing and analysis of data coming from Illumina sequencing machines
☆10Updated this week
Alternatives and similar repositories for npg_seq_pipeline
Users that are interested in npg_seq_pipeline are comparing it to the libraries listed below
Sorting:
- novoBreak: local assembly for breakpoint detection in cancer genomes☆26Updated 7 years ago
- a pipeline for accurate detection of methylated cytosine and differentially methylated regions☆9Updated 9 years ago
- A set of tools to annotate VCF files with expression and readcount data☆29Updated 4 months ago
- Package Homepage: http://bioconductor.org/packages/devel/bioc/html/DRIMSeq.html Bug Reports: https://support.bioconductor.org/p/new/post/…☆11Updated 4 years ago
- Copy Number Variation Detection In Next-generation sequencing Gene panels was designed for small (single-exon) copy number variation (CNV…☆21Updated 5 years ago
- Integrative analysis of complex structural variants☆22Updated 4 years ago
- Structural variant VCF annotation, duplicate removal and comparison☆33Updated 4 months ago
- Pipeline to filter whole exome vcf files and generate a report document for clinical diagnostics.☆14Updated 5 years ago
- toolkit to process gtf files☆17Updated 3 years ago
- BreakSeq2: Ultrafast and accurate nucleotide-resolution analysis of structural variants☆24Updated 9 years ago
- Reproducibility workflow for Gigante et al., 2018: Using long-read sequencing to detect imprinted DNA methylation☆23Updated 6 years ago
- v2.x of the microassembly based somatic variant caller☆24Updated last month
- Functions to compare a SV call sets against a truth set.☆30Updated last month
- 🍶 Genome assembly with short sequence reads☆25Updated last year
- Two pass alignment for long reads☆22Updated 4 years ago
- a Shiny/R application to view and annotate copy number variations☆28Updated 2 years ago
- Reducing reference bias using multiple population reference genomes☆32Updated last year
- R API for browsing, analyzing, and manipulating reference-aligned genome graphs in a GenomicRanges framework☆40Updated this week
- Expectation-Maximization algorithm for Allele-Specific Expression☆21Updated 2 years ago
- Structural Variation and fusion detection using targeted sequencing data from circulating cell free DNA☆29Updated last year
- Suite of tools for analysing off-target reads to find CNVs, homozygous regions, and shared haplotypes☆29Updated last year
- PopSTR - A Population based microsatellite genotyper☆33Updated last year
- Transposon Insertion Finder - Detection of new TE insertions in NGS data☆20Updated 2 months ago
- Unfazed by genomic variant phasing☆27Updated last year
- ☆51Updated 5 years ago
- Simultaneous detection of SNPs and Indels using a 16-genotype probabilistic model☆27Updated last year
- ☆21Updated last year
- Abismal is a mapper of FASTQ bisulfite-converted short reads (between 50 and 1000 bases) to a FASTA reference genome.☆18Updated this week
- Population-based detection of structural variation from High-Throughput Sequencing.☆31Updated 2 years ago
- Plot CNV data with a genome viewer in R☆15Updated 8 years ago