sentisci / fheatmapLinks
R function to plot high quality, elegant heatmap using 'ggplot2' graphics . Some of the important features of this package are, coloring of row/column side tree with respect to the number of user defined cuts in the cluster, add annotations to both columns and rows, option to input annotation palette for tree and column annotations and mul…
☆11Updated 9 years ago
Alternatives and similar repositories for fheatmap
Users that are interested in fheatmap are comparing it to the libraries listed below
Sorting:
- Mostly deprecated in favor of : https://github.com/hbc/bcbioRNASeq. Quality control, differential gene/transcript expression and pathway …☆24Updated 7 years ago
- R package to quickly obtain count vectors from indexed bam files☆15Updated last month
- Rapid and robust analysis of RNA-Seq experiments.☆32Updated 9 years ago
- BigWig manpulation tools using libBigWig and htslib☆29Updated 11 months ago
- Artisanal 🤣 bioinformatics tools and pipelines in Scala☆20Updated 5 years ago
- Allele-Specific Quantification of Structural Variations in Cancer Genomes☆18Updated 6 years ago
- What's The Function of these genes?☆22Updated 8 years ago
- Normalization and difference calling for Next Generation Sequencing (NGS) data via joint multinomial modeling.☆11Updated 3 years ago
- Modeling and correcting fragment sequence bias for RNA-seq☆24Updated last year
- Improved multi-sample transcript abundance estimates using adaptive priors☆20Updated 6 years ago
- Color DNA/RNA bases in terminal output☆21Updated 7 years ago
- Allele frequency filter app☆14Updated 3 years ago
- Benchmarks for RNA-seq quantification pipelines☆8Updated 5 years ago
- R Interface to the NCBI SRA metadata☆23Updated 6 years ago
- Building the constrained coding regions (CCR) model☆16Updated 6 years ago
- Machine learning use cases for teaching☆13Updated 8 years ago
- Chromatin segmentation in R☆19Updated 7 years ago
- SMBL - SnakeMake Bioinformatics Library. Automatic installation of bioinformatics software in your SnakeMake pipelines.☆23Updated 7 years ago
- ☆25Updated 4 years ago
- Allele frequency filtering for Mendelian variant discovery☆18Updated 8 years ago
- Qtip: a tandem simulation approach for accurately predicting read alignment mapping qualities☆25Updated 5 years ago
- prioritize effects of variant annotations from VEP, SnpEff, et al.☆34Updated 7 months ago
- Homebrew formulae for bioinformatics software only available for Linux☆27Updated 5 years ago
- A tool to examine duplicate read characteristics in a BAM file☆12Updated 7 years ago
- A small repo for storing the code for making the files and html for CCRs.☆22Updated 5 years ago
- Import and run CWL workflows on DNAnexus (alpha)☆13Updated 6 years ago
- stageR package☆13Updated 2 years ago
- R package for Enrichment Depletion Logos (EDLogos) and String Logos☆27Updated 6 years ago
- Expectation-Maximization algorithm for Allele-Specific Expression☆21Updated 2 years ago
- Blacktie: a streamlined interface to the popular tophat/cufflinks RNA-seq pipeline☆26Updated 9 years ago