sentisci / fheatmap
R function to plot high quality, elegant heatmap using 'ggplot2' graphics . Some of the important features of this package are, coloring of row/column side tree with respect to the number of user defined cuts in the cluster, add annotations to both columns and rows, option to input annotation palette for tree and column annotations and mul…
☆11Updated 8 years ago
Related projects ⓘ
Alternatives and complementary repositories for fheatmap
- Mostly deprecated in favor of : https://github.com/hbc/bcbioRNASeq. Quality control, differential gene/transcript expression and pathway …☆24Updated 6 years ago
- Modeling and correcting fragment sequence bias for RNA-seq☆24Updated 5 months ago
- R package to quickly obtain count vectors from indexed bam files☆13Updated 3 years ago
- Machine learning use cases for teaching☆13Updated 7 years ago
- Normalization and difference calling for Next Generation Sequencing (NGS) data via joint multinomial modeling.☆11Updated 3 years ago
- BigWig manpulation tools using libBigWig and htslib☆28Updated 3 months ago
- Chromatin segmentation in R☆19Updated 6 years ago
- Hotspot is a program for identifying genomic regions of local enrichment of short-read sequence tags.☆14Updated 10 years ago
- A server for maintaining high-throughput sequencing QC data☆13Updated last year
- Improved multi-sample transcript abundance estimates using adaptive priors☆20Updated 6 years ago
- R package for extracting mutation signatures from a list of somatic mutations☆37Updated 5 years ago
- Scripts for reproducing analyses of large RNA-seq datasets☆15Updated 5 years ago
- Examples of kallisto + sleuth☆11Updated 7 years ago
- Allele frequency filter app☆14Updated 2 years ago
- Allele-Specific Quantification of Structural Variations in Cancer Genomes☆17Updated 5 years ago
- RNA-seq quantifications: gene expression responses to human rhinovirus infection for 6 asthmatic and 6 non-asthmatic donors (SRP046226)☆19Updated 6 years ago
- Benchmarks for RNA-seq quantification pipelines☆8Updated 4 years ago
- A small repo for storing the code for making the files and html for CCRs.☆22Updated 5 years ago
- ☆12Updated last week
- Qtip: a tandem simulation approach for accurately predicting read alignment mapping qualities☆25Updated 5 years ago
- R Interface to the NCBI SRA metadata☆23Updated 5 years ago
- fast webservices based query tool for large sets of genomic features☆25Updated last year
- ☆23Updated 4 years ago
- This project has moved and will no longer be edited here. New link ->☆11Updated 7 years ago
- What's The Function of these genes?☆23Updated 7 years ago
- prioritize effects of variant annotations from VEP, SnpEff, et al.☆33Updated 8 months ago
- Rapid and robust analysis of RNA-Seq experiments.☆32Updated 8 years ago
- Enriched Domain Detector for ChIP-seq data☆16Updated 2 years ago
- A hierarchical multiscale model for inferring transcription factor binding from chromatin accessibility data.☆25Updated 8 years ago