sentisci / fheatmap
R function to plot high quality, elegant heatmap using 'ggplot2' graphics . Some of the important features of this package are, coloring of row/column side tree with respect to the number of user defined cuts in the cluster, add annotations to both columns and rows, option to input annotation palette for tree and column annotations and mul…
☆11Updated 8 years ago
Alternatives and similar repositories for fheatmap:
Users that are interested in fheatmap are comparing it to the libraries listed below
- Mostly deprecated in favor of : https://github.com/hbc/bcbioRNASeq. Quality control, differential gene/transcript expression and pathway …☆24Updated 7 years ago
- Modeling and correcting fragment sequence bias for RNA-seq☆24Updated 7 months ago
- R package to quickly obtain count vectors from indexed bam files☆14Updated 3 years ago
- Normalization and difference calling for Next Generation Sequencing (NGS) data via joint multinomial modeling.☆11Updated 3 years ago
- The vignette provided has a basic sketch of the steps we interactively will go through to build a package with devtools, explains version…☆11Updated 4 years ago
- Chromatin segmentation in R☆19Updated 6 years ago
- Improved multi-sample transcript abundance estimates using adaptive priors☆20Updated 6 years ago
- Benchmarks for RNA-seq quantification pipelines☆8Updated 4 years ago
- Machine learning use cases for teaching☆13Updated 7 years ago
- Examples of kallisto + sleuth☆11Updated 7 years ago
- R Interface to the NCBI SRA metadata☆23Updated 6 years ago
- Scripts for reproducing analyses of large RNA-seq datasets☆15Updated 5 years ago
- prioritize effects of variant annotations from VEP, SnpEff, et al.☆33Updated last month
- Building the constrained coding regions (CCR) model☆16Updated 6 years ago
- Allele-Specific Quantification of Structural Variations in Cancer Genomes☆17Updated 5 years ago
- Enriched Domain Detector for ChIP-seq data☆16Updated 2 years ago
- BigWig manpulation tools using libBigWig and htslib☆28Updated 5 months ago
- stageR package☆11Updated last year
- The `multiGSEA` R package was designed to run a robust GSEA-based pathway enrichment for multiple omics layers.☆17Updated last week
- Gene network analysis☆19Updated 2 years ago
- ☆24Updated 4 years ago
- A tool to examine duplicate read characteristics in a BAM file☆12Updated 7 years ago
- Qtip: a tandem simulation approach for accurately predicting read alignment mapping qualities☆25Updated 5 years ago
- Modular blocks to build Snakemake workflows for reproducible NGS analyses☆22Updated 5 years ago
- Interactive eQTL visualizations☆13Updated 2 years ago
- Archived version of RUVSeq☆8Updated 7 years ago
- Rapid and robust analysis of RNA-Seq experiments.☆32Updated 8 years ago
- RNA-seq quantifications: gene expression responses to human rhinovirus infection for 6 asthmatic and 6 non-asthmatic donors (SRP046226)☆19Updated 7 years ago
- SMBL - SnakeMake Bioinformatics Library. Automatic installation of bioinformatics software in your SnakeMake pipelines.☆23Updated 7 years ago