sentisci / fheatmapLinks
R function to plot high quality, elegant heatmap using 'ggplot2' graphics . Some of the important features of this package are, coloring of row/column side tree with respect to the number of user defined cuts in the cluster, add annotations to both columns and rows, option to input annotation palette for tree and column annotations and mul…
☆11Updated 9 years ago
Alternatives and similar repositories for fheatmap
Users that are interested in fheatmap are comparing it to the libraries listed below
Sorting:
- Mostly deprecated in favor of : https://github.com/hbc/bcbioRNASeq. Quality control, differential gene/transcript expression and pathway …☆24Updated 8 years ago
- R package to quickly obtain count vectors from indexed bam files☆15Updated 7 months ago
- Modeling and correcting fragment sequence bias for RNA-seq☆24Updated last year
- Machine learning use cases for teaching☆13Updated 8 years ago
- Rapid and robust analysis of RNA-Seq experiments.☆32Updated 9 years ago
- Qtip: a tandem simulation approach for accurately predicting read alignment mapping qualities☆25Updated 6 years ago
- Allele-Specific Quantification of Structural Variations in Cancer Genomes☆18Updated 6 years ago
- SMBL - SnakeMake Bioinformatics Library. Automatic installation of bioinformatics software in your SnakeMake pipelines.☆23Updated 8 years ago
- Chromatin segmentation in R☆19Updated 8 years ago
- ☆26Updated 5 years ago
- Visualisation and prioritisation of genomic variants from human exome sequencing projects☆13Updated 6 years ago
- BigWig manpulation tools using libBigWig and htslib☆30Updated last year
- Scripts for reproducing analyses of large RNA-seq datasets☆15Updated 6 years ago
- Artisanal 🤣 bioinformatics tools and pipelines in Scala☆20Updated 6 years ago
- Improved multi-sample transcript abundance estimates using adaptive priors☆20Updated 7 years ago
- R Interface to the NCBI SRA metadata☆23Updated 7 years ago
- Allele frequency filter app☆14Updated 3 years ago
- FRAMA: From RNA-seq data to annotated mRNA assemblies☆12Updated 7 years ago
- Build an index for your BAM Index (BAI)☆17Updated 10 years ago
- RNA-seq quantifications: gene expression responses to human rhinovirus infection for 6 asthmatic and 6 non-asthmatic donors (SRP046226)☆19Updated 8 years ago
- Normalization and difference calling for Next Generation Sequencing (NGS) data via joint multinomial modeling.☆11Updated 4 years ago
- Add functional variant annotation to MAF file☆11Updated last year
- ☆10Updated last year
- GeneSCF moved to a dedicated GitHub page, https://github.com/genescf/GeneSCF☆19Updated 5 years ago
- Allele frequency filtering for Mendelian variant discovery☆18Updated 9 years ago
- R package for extracting mutation signatures from a list of somatic mutations☆37Updated 6 years ago
- Expectation-Maximization algorithm for Allele-Specific Expression☆21Updated 2 years ago
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆42Updated 3 years ago
- ALOFT, the Annotation Of Loss-of-Function Transcripts, provides extensive functional annotations to loss-of-function variants in the hum…☆19Updated 6 years ago
- zero-inflated negative binomial gene expression in R☆20Updated 8 years ago