sentisci / fheatmap
R function to plot high quality, elegant heatmap using 'ggplot2' graphics . Some of the important features of this package are, coloring of row/column side tree with respect to the number of user defined cuts in the cluster, add annotations to both columns and rows, option to input annotation palette for tree and column annotations and mul…
☆11Updated 8 years ago
Alternatives and similar repositories for fheatmap:
Users that are interested in fheatmap are comparing it to the libraries listed below
- Mostly deprecated in favor of : https://github.com/hbc/bcbioRNASeq. Quality control, differential gene/transcript expression and pathway …☆24Updated 7 years ago
- R package to quickly obtain count vectors from indexed bam files☆15Updated 3 years ago
- Building the constrained coding regions (CCR) model☆16Updated 6 years ago
- Normalization and difference calling for Next Generation Sequencing (NGS) data via joint multinomial modeling.☆11Updated 3 years ago
- Chromatin segmentation in R☆19Updated 7 years ago
- Machine learning use cases for teaching☆13Updated 7 years ago
- R Interface to the NCBI SRA metadata☆23Updated 6 years ago
- Modeling and correcting fragment sequence bias for RNA-seq☆24Updated 9 months ago
- ☆12Updated last year
- Improved multi-sample transcript abundance estimates using adaptive priors☆20Updated 6 years ago
- Benchmarks for RNA-seq quantification pipelines☆8Updated 5 years ago
- Examples of kallisto + sleuth☆11Updated 7 years ago
- A tool to examine duplicate read characteristics in a BAM file☆12Updated 7 years ago
- A Practical (And Opinionated) Guide To Analyzing 450K Data☆35Updated 10 years ago
- Allele-Specific Quantification of Structural Variations in Cancer Genomes☆17Updated 6 years ago
- The `multiGSEA` R package was designed to run a robust GSEA-based pathway enrichment for multiple omics layers.☆18Updated 2 months ago
- Artisanal 🤣 bioinformatics tools and pipelines in Scala☆20Updated 5 years ago
- prioritize effects of variant annotations from VEP, SnpEff, et al.☆33Updated 3 months ago
- ☆24Updated 4 years ago
- RNA-seq quantifications: gene expression responses to human rhinovirus infection for 6 asthmatic and 6 non-asthmatic donors (SRP046226)☆19Updated 7 years ago
- Scripts for reproducing analyses of large RNA-seq datasets☆15Updated 5 years ago
- Color DNA/RNA bases in terminal output☆20Updated 7 years ago
- Allele frequency filter app☆14Updated 2 years ago
- Qtip: a tandem simulation approach for accurately predicting read alignment mapping qualities☆25Updated 5 years ago
- Rapid and robust analysis of RNA-Seq experiments.☆32Updated 8 years ago
- Callable Cancer Loci - assessment of sequencing coverage for actionable and pathogenic loci in cancer☆21Updated 4 years ago
- Add functional variant annotation to MAF file☆11Updated 4 months ago
- Scripts and software supplement for "Gene-level differential analysis at transcript-level resolution" by Yi, Pimentel, Bray and Pachter☆19Updated 7 years ago
- AlignerBoost is a generalized software toolkit for boosting Next-Gen sequencing mapping precision using a Bayesian based mapping quality …☆11Updated 3 years ago
- A python script used to annotate genomic intervals.☆18Updated 4 years ago