Alternatives and similar repositories for snapr

Users that are interested in snapr are comparing it to the libraries listed below

• gkno / gkno_launcher
  The gkno launcher for executing tools or pipelines
  ☆31Updated 8 years ago
• arq5x / grabix
  a wee tool for random access into BGZF files.
  ☆85Updated 7 years ago
• PMBio / limix-backup
  ☆45Updated 9 years ago
• gt1 / biobambam
  Tools for bam file processing
  ☆55Updated 10 years ago
• boutroslab / cld
  A software for the multispecies design of CRISPR/Cas9 libraries
  ☆36Updated 3 years ago
• jgurtowski / ectools
  tools for error correction and working with long read data
  ☆44Updated 10 years ago
• ryanlayer / svv
  Stupid Simple Structural Variant View
  ☆25Updated 8 years ago
• bjpop / rubra
  Infrastructure code to support DNA pipeline
  ☆38Updated 10 years ago
• brentp / bigly
  a pileup library that embraces the huge
  ☆43Updated 5 years ago
• brentp / hts-python
  pythonic wrapper for libhts (moved to: https://github.com/quinlan-lab/hts-python)
  ☆49Updated 8 years ago
• enasequence / cramtools
  CRAM format specification and java API for read data.
  ☆60Updated 7 years ago
• karel-brinda / rnftools
  RNF framework for NGS: simulation of reads, evaluation of mappers, conversion of RNF-compliant data.
  ☆14Updated 6 years ago
• homologus / Pandoras-Toolbox-for-Bioinformatics
  A collection of well-known bioinformatics programs.
  ☆25Updated 10 years ago
• steinmann / peakzilla
  Peakzilla is a self-learning algorithm to identify transcription factor binding sites from ChIP-seq data. I would be very happy if you tr…
  ☆20Updated last month
• DecodeGenetics / BamHash
  ☆36Updated 5 years ago
• sebhtml / ray
  Ray -- Parallel genome assemblies for parallel DNA sequencing
  ☆67Updated 8 years ago
• BD2KGenomics / toil-scripts
  Toil workflows for common genomic pipelines
  ☆33Updated 6 years ago
• mariokostelac / ra-integrate
  DNA assembler developed on FER (Croatia), RBI (Croatia) and GIS (Singapore)
  ☆18Updated 9 years ago
• evoldoers / wtfgenes
  What's The Function of these genes?
  ☆22Updated 8 years ago
• pmelsted / KmerStream
  Streaming algorithm for computing kmer statistics for massive genomics datasets
  ☆54Updated 5 years ago
• AlexanderDilthey / MHC-PRG
  Population Reference Graphs for the HLA and MHC.
  ☆35Updated 6 years ago
• karel-brinda / smbl
  SMBL - SnakeMake Bioinformatics Library. Automatic installation of bioinformatics software in your SnakeMake pipelines.
  ☆23Updated 8 years ago
• amplab / smash
  Benchmarking toolkit for variant calling
  ☆48Updated 4 years ago
• iqbal-lab / cortex
  reference free variant assembly
  ☆34Updated 2 years ago
• BenLangmead / qtip
  Qtip: a tandem simulation approach for accurately predicting read alignment mapping qualities
  ☆25Updated 5 years ago
• pachterlab / kallisto_paper_analysis
  Analysis from kallisto paper
  ☆32Updated 9 years ago
• tszalay / poreseq
  Error correction and variant calling algorithm for nanopore sequencing
  ☆26Updated 9 years ago
• wanpinglee / MOSAIK
  reference-guided aligner for next-generation sequencing technologies
  ☆56Updated 9 years ago
• mourisl / Lighter
  Fast and memory-efficient sequencing error corrector
  ☆93Updated last year
• cosmo-team / cosmo
  Cosmo is a fast, low-memory DNA assembler using a Succinct (variable order) de Bruijn Graph.
  ☆52Updated last year