PriceLab / snaprLinks
SNAPR: a bioinformatics pipeline for efficient and accurate RNA-seq alignment and analysis
☆25Updated 10 years ago
Alternatives and similar repositories for snapr
Users that are interested in snapr are comparing it to the libraries listed below
Sorting:
- Infrastructure code to support DNA pipeline☆38Updated 10 years ago
- Benchmarking toolkit for variant calling☆47Updated 4 years ago
- Stupid Simple Structural Variant View☆25Updated 8 years ago
- Tools for bam file processing☆55Updated 10 years ago
- The gkno launcher for executing tools or pipelines☆31Updated 8 years ago
- ☆37Updated 4 years ago
- ☆12Updated 9 years ago
- a pileup library that embraces the huge☆43Updated 4 years ago
- Toil workflows for common genomic pipelines☆33Updated 5 years ago
- RNF framework for NGS: simulation of reads, evaluation of mappers, conversion of RNF-compliant data.☆14Updated 6 years ago
- What's The Function of these genes?☆22Updated 8 years ago
- CRAM format specification and java API for read data.☆60Updated 6 years ago
- a wee tool for random access into BGZF files.☆84Updated 7 years ago
- FAST: Fast Analysis of Sequences Toolbox☆31Updated 5 years ago
- pythonic wrapper for libhts (moved to: https://github.com/quinlan-lab/hts-python)☆49Updated 8 years ago
- HPG Aligner is an ultrafast and highly sensitive Next-Generation Sequencing (NGS) mapper which supoprts both DNA and RNA alignment☆34Updated 7 years ago
- Tools for next-generation sequencing analysis☆88Updated 6 years ago
- Real time data analysis tools for the minION sequencing platform.☆30Updated 3 years ago
- A Feature Density Estimator for High-Throughput Sequence Tags☆23Updated 4 years ago
- tools for error correction and working with long read data☆44Updated 10 years ago
- Basic, no assumptions, multi-pileup☆24Updated 11 years ago
- Load numpy arrays and HDF5 files from VCF (variant call format)☆31Updated 7 years ago
- Novel Adjacency Identification with Barcoded Reads☆13Updated 3 years ago
- A software for the multispecies design of CRISPR/Cas9 libraries☆35Updated 2 years ago
- Parallel merging, squaring off and ensemble calling for genomic variants☆20Updated 5 years ago
- Curated collection of open-source bioinformatics tools☆28Updated 6 years ago
- BreakSeq2: Ultrafast and accurate nucleotide-resolution analysis of structural variants☆24Updated 9 years ago
- Graphical assessment of structrial variants using 10x genomics data☆10Updated 8 years ago
- A catalogue of docker images for NGS data analysis tools☆9Updated 5 years ago
- ☆45Updated 8 years ago