jernst98 / ChromImputeLinks
☆16Updated last year
Alternatives and similar repositories for ChromImpute
Users that are interested in ChromImpute are comparing it to the libraries listed below
Sorting:
- Chromatin segmentation in R☆19Updated 7 years ago
- A Package For Predicting The Disruptiveness Of Single Nucleotide Polymorphisms On Transcription Factor Binding Sites.☆29Updated 10 months ago
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆42Updated 3 years ago
- Differential ATAC-seq toolkit☆27Updated last year
- A tool for Read Multi-Mapper Resolution☆23Updated 8 years ago
- A hierarchical multiscale model for inferring transcription factor binding from chromatin accessibility data.☆26Updated 8 years ago
- R package for Methylation-based Inference of Regulatory Activity☆13Updated 5 years ago
- a peak-calling and differential analysis tool for replicated ChIP-Seq data☆37Updated 3 years ago
- PARE: a computational method to Predict Active Regulatory Elements☆11Updated 5 years ago
- A small R package to make sequencing read coverage plots in R.☆38Updated 2 years ago
- SPP - R package for analysis of ChIP-seq and other functional sequencing data☆42Updated 3 years ago
- Parse TF motifs from public databases, read into R, and scan using 'rtfbs'.☆23Updated 6 years ago
- Sashimi plots for RNA-seq data using detected transcripts☆28Updated 3 months ago
- Hotspot is a program for identifying genomic regions of local enrichment of short-read sequence tags.☆14Updated 11 years ago
- Allele-Specific Expression by Single-Cell RNA Sequencing☆28Updated 4 years ago
- Scripts and software supplement for "Gene-level differential analysis at transcript-level resolution" by Yi, Pimentel, Bray and Pachter☆19Updated 7 years ago
- Package Homepage: http://bioconductor.org/packages/devel/bioc/html/annotatr.html Bug Reports: https://support.bioconductor.org/p/new/post…☆27Updated 10 months ago
- Useful tools for working with Salmon output☆38Updated 5 years ago
- JAMM Peak Finder for Sequencing Datasets☆29Updated 5 years ago
- fast webservices based query tool for large sets of genomic features☆25Updated last month
- Enriched Domain Detector for ChIP-seq data☆16Updated 2 years ago
- Genomic Association Tester☆31Updated 2 years ago
- BigWig manpulation tools using libBigWig and htslib☆29Updated 10 months ago
- Multi-sample cancer phylogeny reconstruction☆35Updated 7 years ago
- chia pet analysis software☆25Updated 6 years ago
- R package for reading in & working with NucleoATAC outputs☆26Updated 6 years ago
- Identify cell barcodes from single-cell genomics sequencing experiments☆43Updated 3 years ago
- ChIP-seq DC and QC Pipeline☆34Updated 4 years ago
- Relative Abundance of Transcripts: An R package for the detection of Differential Transcript isoform Usage.☆34Updated 3 years ago
- Modeling and correcting fragment sequence bias for RNA-seq☆24Updated last year