☆16Jan 2, 2024Updated 2 years ago
Alternatives and similar repositories for ChromImpute
Users that are interested in ChromImpute are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- COMETgazer mehylation analysis software suite☆10Jul 21, 2019Updated 7 years ago
- Repository for the Epigenomics Tutorial hold at ISMB 2017 in Prague☆14Aug 19, 2020Updated 6 years ago
- A hierarchical multiscale model for inferring transcription factor binding from chromatin accessibility data.☆25Aug 17, 2016Updated 10 years ago
- Chromatin segmentation in R☆19Feb 4, 2018Updated 8 years ago
- Simulation tool for ChIP- and other -seq experiments☆14Mar 13, 2023Updated 3 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Long Long Term Memory Neural Net Cells☆10Jan 25, 2022Updated 4 years ago
- Hotspot is a program for identifying genomic regions of local enrichment of short-read sequence tags.☆16Apr 12, 2014Updated 12 years ago
- Basic operations on the space of numerical functions defined on the genome using lazy evaluators for flexibility and efficiency☆154May 31, 2026Updated 3 months ago
- Impute DNA methylation from WGBS data.☆12Apr 23, 2019Updated 7 years ago
- Preprocessing pipeline for (sc)ATAC data☆10Feb 22, 2022Updated 4 years ago
- python wrapper to dpryan79's bigwig library using cffi☆19May 13, 2016Updated 10 years ago
- A Package For Predicting The Disruptiveness Of Single Nucleotide Polymorphisms On Transcription Factor Binding Sites.☆35May 20, 2026Updated 4 months ago
- Applying IDR analysis to Homer peaks.☆18May 8, 2020Updated 6 years ago
- Trans-association between HLA and TCR-CDR3☆20Mar 29, 2023Updated 3 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- ☆22Aug 11, 2020Updated 6 years ago
- qtools has helper functions to submit jobs to compute clusters (PBS on TSCC, SGE on oolite) from within Python☆21Sep 20, 2023Updated 3 years ago
- Color DNA/RNA bases in terminal output☆22Aug 29, 2017Updated 9 years ago
- simplified cellranger for long-read data☆22Aug 27, 2025Updated last year
- Joint normalization of multiple Hi-C matrices, visualization and detection of differential chromatin interactions, supporting covariates.☆10Jul 9, 2026Updated 2 months ago
- ☆15Nov 9, 2018Updated 7 years ago
- Analytical pipeline developed to anlayze Cut and Run data. Inspired by both Henikoff (SEACR) and Orkin (Cut&RunTools) lab pipelines.☆20May 26, 2025Updated last year
- Useful FILe and stream Operations☆45Dec 21, 2015Updated 10 years ago
- A fine-mapping method integrating GWAS summary statistics and functional annotation data☆11Dec 28, 2023Updated 2 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Beeswarm plots for python☆34Nov 2, 2015Updated 10 years ago
- Manage the visualization of large amounts of other people's [often messy] genomics data☆18Apr 10, 2016Updated 10 years ago
- MUltiScale enrIchment Calling for ChIP-Seq Datasets☆23Mar 14, 2019Updated 7 years ago
- ☆101Jun 16, 2026Updated 3 months ago
- Analysis of patch-seq data in pancreatic islets (ND, T2D and T1D)☆11May 9, 2020Updated 6 years ago
- Python interface to the GenoLogics LIMS server via its REST API.☆11Mar 30, 2022Updated 4 years ago
- Forensic analysis tool useful in backwards computing information from next-generation sequencing data.☆11Sep 7, 2026Updated 2 weeks ago
- Computable build reports, package metadata, and download stats from the Bioconductor project☆22Updated this week
- Useful small programs☆26Jan 11, 2013Updated 13 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Python Optimal Leaf Ordering for Hierarchical Clustering☆22Jun 21, 2017Updated 9 years ago
- Make interactive LocusZoom plots from a local GWAS file☆10May 9, 2025Updated last year
- Suite of tools to conduct methylation data analysis. Methods from this workspace can be used for alignment and quality control analysis f…☆21Nov 19, 2020Updated 5 years ago
- ☆13Jun 28, 2024Updated 2 years ago
- Multi-scale Detection of Chromatin Loops from Hi-C and Micro-C Maps using Scale-Space Representation☆84Jan 24, 2025Updated last year
- Modelling DNA methylation profiles☆24Jul 16, 2020Updated 6 years ago
- %conda magic for IPython☆29Mar 16, 2017Updated 9 years ago