jernst98 / ChromImpute
☆15Updated 10 months ago
Related projects ⓘ
Alternatives and complementary repositories for ChromImpute
- Chromatin segmentation in R☆19Updated 6 years ago
- a peak-calling and differential analysis tool for replicated ChIP-Seq data☆37Updated 2 years ago
- A Package For Predicting The Disruptiveness Of Single Nucleotide Polymorphisms On Transcription Factor Binding Sites.☆28Updated 3 months ago
- A tool for Read Multi-Mapper Resolution☆24Updated 7 years ago
- A hierarchical multiscale model for inferring transcription factor binding from chromatin accessibility data.☆25Updated 8 years ago
- Identify cell barcodes from single-cell genomics sequencing experiments☆41Updated 2 years ago
- A small R package to make sequencing read coverage plots in R.☆37Updated 2 years ago
- Allele-Specific Expression by Single-Cell RNA Sequencing☆28Updated 4 years ago
- Expectation-Maximization algorithm for Allele-Specific Expression☆21Updated last year
- Differential ATAC-seq toolkit☆27Updated 10 months ago
- Package Homepage: http://bioconductor.org/packages/devel/bioc/html/annotatr.html Bug Reports: https://support.bioconductor.org/p/new/post…☆26Updated 2 months ago
- R package for haplotype phasing using single-cell RNA-seq data☆13Updated 7 years ago
- SPP - R package for analysis of ChIP-seq and other functional sequencing data☆39Updated 3 years ago
- Enriched Domain Detector for ChIP-seq data☆16Updated 2 years ago
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆41Updated 2 years ago
- Parse TF motifs from public databases, read into R, and scan using 'rtfbs'.☆22Updated 5 years ago
- fast webservices based query tool for large sets of genomic features☆25Updated last year
- ☆24Updated 7 months ago
- ImReP is a computational method for rapid and accurate profiling of the adaptive immune repertoire from regular RNA-Seq data.☆28Updated 5 years ago
- Slinker offers a succinct and complementary method to visualise RNA-Seq data through superTranscripts.☆19Updated 2 years ago
- ChIP-seq DC and QC Pipeline☆34Updated 3 years ago
- ☆12Updated last week
- Methods for summarizing and visualizing multi-biosample functional genomic annotations☆41Updated last year
- A curated list of awesome clonality and tumor heterogeneity resources☆15Updated 5 years ago
- Multi-sample cancer phylogeny reconstruction☆34Updated 7 years ago
- PARE: a computational method to Predict Active Regulatory Elements☆10Updated 5 years ago
- ☆15Updated 7 years ago
- Personal diploid genome creation and coordinate conversion☆21Updated last month
- Tools to handle reads sequenced with unique molecular identifiers (UMIs).☆30Updated 7 years ago