A fast and efficient short read mapper
☆13Nov 7, 2021Updated 4 years ago
Alternatives and similar repositories for FEM
Users that are interested in FEM are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- mrsFAST: micro-read substitution-only Fast Alignment Search Tool☆28Sep 22, 2020Updated 5 years ago
- Rcount: simple and flexible RNA-Seq read counting☆12May 19, 2022Updated 3 years ago
- Long Approximate Matches-based Split Aligner☆13Apr 6, 2017Updated 8 years ago
- DeeNA Zip (SAM/BAM compression tool)☆13May 25, 2019Updated 6 years ago
- Normalization and difference calling for Next Generation Sequencing (NGS) data via joint multinomial modeling.☆11Oct 8, 2021Updated 4 years ago
- WALT is a read mapping program for bisulfite sequencing DNA methylation studies.☆17Aug 23, 2022Updated 3 years ago
- HPG Aligner is an ultrafast and highly sensitive Next-Generation Sequencing (NGS) mapper which supoprts both DNA and RNA alignment☆34Jul 7, 2017Updated 8 years ago
- Processing and analysis of data coming from Illumina sequencing machines☆10Mar 14, 2026Updated last week
- NGS perl modules☆11Updated this week
- AlignerBoost is a generalized software toolkit for boosting Next-Gen sequencing mapping precision using a Bayesian based mapping quality …☆11Mar 1, 2022Updated 4 years ago
- Gitools, is a framework for analysis and visualization of genomic data. Data and results are represented as browsable heatmaps. Gitools a…☆28Dec 5, 2022Updated 3 years ago
- A deletion finder through re-aligning the whole soft-clipping read☆12Jul 2, 2016Updated 9 years ago
- gvcf aggregation tool☆12Feb 7, 2018Updated 8 years ago
- Kart: A divide-and-conquer algorithm for NGS read mapping with high error tolerance☆26May 21, 2020Updated 5 years ago
- Simple and quick FastQ and FastA tool for file reading and conversion☆17Jul 11, 2014Updated 11 years ago
- RNA-Seq Unified Mapper☆27Sep 9, 2022Updated 3 years ago
- ☆12Jan 21, 2016Updated 10 years ago
- R function to plot high quality, elegant heatmap using 'ggplot2' graphics . Some of the important features of this package are, colorin…☆11Apr 19, 2016Updated 9 years ago
- Applying IDR analysis to Homer peaks.☆15May 8, 2020Updated 5 years ago
- COMETgazer mehylation analysis software suite☆10Jul 21, 2019Updated 6 years ago
- example applications built using bíogo☆18Apr 19, 2021Updated 4 years ago
- RNF framework for NGS: simulation of reads, evaluation of mappers, conversion of RNF-compliant data.☆14Nov 10, 2025Updated 4 months ago
- Gordon's Text utils Library☆10Apr 11, 2022Updated 3 years ago
- Targeted Amplicon Bisulfite Sequencing Analysis Tool☆11May 8, 2019Updated 6 years ago
- R package to quickly obtain count vectors from indexed bam files☆15Jun 13, 2025Updated 9 months ago
- Estimation of pairwise distances under a probabilistic framework☆11Aug 11, 2023Updated 2 years ago
- Lightweight resources assembly algorithm☆19May 17, 2017Updated 8 years ago
- Peakzilla is a self-learning algorithm to identify transcription factor binding sites from ChIP-seq data. I would be very happy if you tr…☆21Aug 18, 2025Updated 7 months ago
- Next generation sequencing (NGS/HTS) tools.☆19Jan 25, 2024Updated 2 years ago
- ☆13Jan 8, 2020Updated 6 years ago
- Fast in-silico normalization algorithm for NGS data☆23Nov 1, 2021Updated 4 years ago
- An application to remove PCR duplicates from high throughput sequencing runs.☆11Apr 22, 2018Updated 7 years ago
- SNAPR: a bioinformatics pipeline for efficient and accurate RNA-seq alignment and analysis☆25Apr 7, 2015Updated 10 years ago
- Python wrapper around the popular ChIP-Seq peak caller SICER☆15Dec 7, 2017Updated 8 years ago
- Cross-platform GUI desktop application for making biological heatmaps☆19Nov 10, 2022Updated 3 years ago
- A Modern Perl Framework for High Throughput Sequencing analysis☆17May 6, 2020Updated 5 years ago
- ☆20Dec 13, 2023Updated 2 years ago
- Ritornello is a high fidelity control free ChIP-seq peak calling algorithm☆13Aug 23, 2018Updated 7 years ago
- ☆15Oct 19, 2023Updated 2 years ago