ernstlab / ChromTime
Modeling Spatio-temporal Dynamics of Chromatin Marks
☆11Updated 3 years ago
Related projects ⓘ
Alternatives and complementary repositories for ChromTime
- Code and simulations using biologically annotated neural networks☆21Updated 3 years ago
- A Package For Predicting The Disruptiveness Of Single Nucleotide Polymorphisms On Transcription Factor Binding Sites.☆28Updated 3 months ago
- kallisto index tag extractor☆20Updated 5 years ago
- 🧭 Navigate single-cell RNA-seq datasets in your web browser.☆26Updated last year
- Single cell interactive plotting tools☆23Updated 4 years ago
- Allele-Specific Expression by Single-Cell RNA Sequencing☆28Updated 4 years ago
- Building the constrained coding regions (CCR) model☆16Updated 5 years ago
- Calibrate and compare methods for denoising single-cell RNA-seq data☆2Updated 3 years ago
- Correctly counting molecules using unique molecular identifiers (UMIs)☆9Updated 3 years ago
- A set of tools for accurate quantitation of single-cell allele-specific expression☆12Updated last year
- Reconstructs complex variation using Bionano optical mapping data and breakpoint graph data☆16Updated 11 months ago
- Code for reproducing results from the paper "Modular and efficient pre-processing of single-cell RNA-seq data"☆23Updated 3 years ago
- Code associated with MIX-seq manuscript☆14Updated 4 years ago
- ☆12Updated 3 years ago
- Snakefile-based process to turn 1.4 million ocular cells into a unified meta-atlas☆24Updated 9 months ago
- ☆15Updated 5 months ago
- epigenome analysis to rank transcription factors☆13Updated 4 years ago
- Inferring selection in cancer sequencing data using ABC and population based simulations☆11Updated 3 years ago
- Workflow for ZINB-WaVE + DESeq2 intergration for single-cell RNA-seq☆30Updated 3 years ago
- Gene Expression Decomposition and Integration☆15Updated 2 months ago
- Code and results from TotalSeqC antibody titration and pipeline benchmarking for CITE-seq experiments☆9Updated 3 years ago
- The R package "sarlacc" contains a pipeline to analyse nanopore sequencing data. It trims adapter sequences, retrieves optional UMI's, cl…☆13Updated 5 years ago
- Exon-Intron Split Analysis (EISA) in R☆15Updated 2 weeks ago
- Toolkit for benchmarking fusion transcript predictions☆17Updated 2 months ago
- Version 2.1.0 released☆23Updated 5 years ago
- INTERSTELLAR: Interpretation, scalable transformation, and emulation of large-scale sequencing reads☆15Updated 5 months ago
- R package for haplotype phasing using single-cell RNA-seq data☆13Updated 7 years ago
- A tool for Read Multi-Mapper Resolution☆24Updated 7 years ago
- Introduction to single cell RNAseq data analysis and interpretation course work provided by Harvard Informatics Team.☆16Updated 5 years ago
- Differential ATAC-seq toolkit☆27Updated 10 months ago