Modeling Spatio-temporal Dynamics of Chromatin Marks
☆12Aug 2, 2021Updated 5 years ago
Alternatives and similar repositories for ChromTime
Users that are interested in ChromTime are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Vignettes to process data and generate figures for the EPI-clone paper☆13May 21, 2025Updated last year
- Code for reproducing results from the paper "RNA velocity and protein acceleration from single-cell multiomics experiments."☆11Feb 1, 2020Updated 6 years ago
- COMETgazer mehylation analysis software suite☆10Jul 21, 2019Updated 7 years ago
- Identifying differentially methylated regions from MethylC-seq (bisulfite-sequencing) data☆28Jun 13, 2023Updated 3 years ago
- This is the BWA workflow used in the PanCancer project used to allign all the BAM files.☆11Dec 27, 2022Updated 3 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- ☆10Dec 12, 2017Updated 8 years ago
- ☆19May 27, 2025Updated last year
- Wrappers around NGS peak callers to both call peaks and run IDR☆11Aug 2, 2013Updated 13 years ago
- GREAT algorithm in Python☆17Oct 24, 2022Updated 4 years ago
- Docker containers that demonstrate a proof of concept bwa alignment workflow☆14Jan 13, 2015Updated 11 years ago
- python (cython) wrapper for https://github.com/ryanlayer/giggle for fast interval searching of huge datasets.☆16Feb 13, 2018Updated 8 years ago
- Read level DNA methylation analysis of bisulfite converted sequencing data☆20Feb 23, 2026Updated 8 months ago
- Repo that aids in the detection of microsatellite instabilities (MSI) from sequencing data☆21Apr 22, 2024Updated 2 years ago
- ChromDiff program as described in Yen and Kellis, Nature Communications 2015.☆14May 12, 2016Updated 10 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Anomaly Screening Applying Pseudowells (ASAP). FORCE Hackathon, Stavanger 18-19 September 2018.☆10Jan 11, 2019Updated 7 years ago
- Independent Component Analysis decipher functional modules for better cell clustering and annotation☆19Apr 4, 2022Updated 4 years ago
- Python wrapper around the popular ChIP-Seq peak caller SICER☆15Dec 7, 2017Updated 8 years ago
- ☆13Dec 19, 2022Updated 3 years ago
- Python module for the easy handling and analysis of DNase-seq data☆38Jul 18, 2019Updated 7 years ago
- Scasat is a single cell ATAC-seq preprocessing and analysis pipeline☆35Feb 27, 2019Updated 7 years ago
- ☆53Mar 22, 2026Updated 7 months ago
- A Demultiplexing Tool for Illumina Sequencers☆10Sep 27, 2016Updated 10 years ago
- R package: determining cutoff values from bimodal data☆11Mar 17, 2024Updated 2 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Suite of tools to conduct methylation data analysis. Methods from this workspace can be used for alignment and quality control analysis f…☆21Nov 19, 2020Updated 5 years ago
- Material for the "Advanced topics in single-cell analysis" course (2022 edition)☆18May 20, 2022Updated 4 years ago
- Clonal reconstruction from HTS data☆10Oct 27, 2021Updated 5 years ago
- ChIP-seq peak caller for reads mapped to a graph-based reference genome☆26Aug 17, 2024Updated 2 years ago
- Pathway-Level Single-Cell Functional Profiling of Individual Patient Samples☆11Aug 6, 2025Updated last year
- How to use CENTIPEDE to determine if a transcription factor is bound.☆26Mar 18, 2018Updated 8 years ago
- Preprocessing of single-cell RNA-Seq (deprecated)☆61Jul 5, 2019Updated 7 years ago
- Interface to 10x Genomics' 1.3 m single cell data set☆19Aug 2, 2018Updated 8 years ago
- ☆27Apr 15, 2025Updated last year
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Single-cell copy number calling and event history reconstruction.☆29Sep 3, 2026Updated last month
- Reconstructs complex variation using Bionano optical mapping data and breakpoint graph data☆19Nov 13, 2023Updated 2 years ago
- R package: TopDom - An efficient and Deterministic Method for identifying Topological Domains in Genomes☆23Sep 1, 2026Updated last month
- An R Bioconductor package providing interactive connections to igv.js (the Integrative Genomics Viewer) in a web browser☆46Sep 29, 2026Updated last month
- A Package For Predicting The Disruptiveness Of Single Nucleotide Polymorphisms On Transcription Factor Binding Sites.☆36Oct 7, 2026Updated 3 weeks ago
- Somatic indel discovery tool for tumor RNA-Seq data.☆24Nov 21, 2025Updated 11 months ago
- Chromatin State Maps in Mouse☆24May 16, 2018Updated 8 years ago