zhou-lab / biscuit
BISulfite-seq CUI Toolkit
☆63Updated last year
Related projects ⓘ
Alternatives and complementary repositories for biscuit
- Allele-specific alignment sorting☆53Updated last year
- HMMRATAC peak caller for ATAC-seq data☆98Updated 2 years ago
- Somatic copy number analysis using WGS paired end wholegenome sequencing☆69Updated 3 years ago
- Tutorial Website☆53Updated 3 years ago
- A pipeline for analyzing DNA methylation data from bisulfite sequencing.☆68Updated 2 years ago
- Single Cell Long Read is a suite of tools dedicated to Cell barcode / UMI assignment and analysis of highly multiplexed single cell Nanop…☆72Updated last year
- ☆30Updated 6 years ago
- ENCODE long read RNA-seq pipeline☆44Updated last year
- RepEnrich2 is an updated method to estimate repetitive element enrichment using high-throughput sequencing data.☆36Updated 2 years ago
- perl cworld module and collection of utility/analysis scripts for C data (3C, 4C, 5C, Hi-C)☆64Updated 5 years ago
- R package designed to simplify structural variant analysis☆70Updated 2 years ago
- Quality of RNA-Seq Toolset☆52Updated 5 years ago
- A package for quantifying transposable elements at a locus level for RNAseq datasets.☆24Updated 2 months ago
- TAD calling, phase imputation, 3D modeling and more for diploid single-cell Hi-C (Dip-C) and general Hi-C☆107Updated 3 years ago
- ☆37Updated last year
- fork of RSeQC python RNAseq metrics suit of tools☆46Updated 5 years ago
- A toolset for profiling alternative splicing events in RNA-Seq data.☆78Updated 3 months ago
- This package computes informative enrichment and quality measures for ChIP-seq/DNase-seq/FAIRE-seq/MNase-seq data. It can also be used to…☆54Updated 4 years ago
- A toolkit for QC and visualization of ATAC-seq results.☆66Updated 3 weeks ago
- Robust detection of clinically relevant structural and copy number variation from whole genome sequencing data☆65Updated 2 months ago
- toolbox for analysing BS-seq data, advance features in SNV, ASM and DMR☆62Updated 10 months ago
- FEELnc : FlExible Extraction of LncRNA☆82Updated last month
- tools to find circRNAs in RNA-seq data☆40Updated 6 years ago
- Tools for analyzing DNA methylation data☆28Updated 2 weeks ago
- optimization of ribosome P-site positioning in ribosome profiling data☆45Updated 10 months ago
- Analysis of subclonal copy number alterations (CNA) and loss of heterozygosity (LOH) in cancer☆94Updated 3 years ago
- gemBS is a bioinformatics pipeline designed for high throughput analysis of DNA methylation from Whole Genome Bisulfite Sequencing data (…☆32Updated 2 years ago
- DCC/DAC methylation pipeline source☆55Updated 4 years ago
- Tools for extracting read counts and gc and mappability statistics in preparation for running HMMCopy.☆39Updated 3 years ago