jgolob / maliampiView external linksLinks
Maximum Likelihood Amplicon Pipeline
☆22May 22, 2024Updated last year
Alternatives and similar repositories for maliampi
Users that are interested in maliampi are comparing it to the libraries listed below
Sorting:
- Luslab nextflow modules☆14Apr 30, 2021Updated 4 years ago
- Analyze a set of genomes with the anvi'o pangenome pipeline☆16Oct 11, 2023Updated 2 years ago
- Dadaist2 🟨 Highway to R☆13Mar 7, 2025Updated 11 months ago
- C++ tools for NCBI taxonomy tasks☆12Jun 26, 2025Updated 7 months ago
- BACTpipe: An assembly and annotation pipeline for bacterial genomics☆20Dec 3, 2024Updated last year
- ☆11Apr 5, 2021Updated 4 years ago
- A manuscript exploring the effects of taxonomic bias on microbiome differential-abundance analysis.☆12Oct 30, 2023Updated 2 years ago
- A toolkit for analyzing and visualizing phylogenetic placement data☆63Oct 14, 2025Updated 4 months ago
- statdivlab's teaching materials for STAMPS @ the MBL in 2019☆11Jul 28, 2019Updated 6 years ago
- screening metagenomes for arbitrary lineages, using gene-centric assembly methods and phylogenetics☆11Oct 29, 2020Updated 5 years ago
- Strain-level abundances estimation in metagenomic samples using variation graphs☆24Jan 29, 2023Updated 3 years ago
- R package for microbiome analysis. Provides helper functions for common workflows ranging from preprocessing to visualization.☆24Jan 24, 2024Updated 2 years ago
- ☆18Feb 5, 2026Updated last week
- An HMM and Phylogenetic Placement based Ultra-Fast Taxonomy Assignment Tool for 16S sequencing☆11Nov 7, 2025Updated 3 months ago
- Generate mutated sequence files from a reference genome.☆11Dec 26, 2022Updated 3 years ago
- Viral Identification and Discovery - A viral characterization pipeline built in Nextflow.☆11May 19, 2020Updated 5 years ago
- Protocols, data and code associated with the MK-SpikeSeq method for quantifying the absolute abundances of microbiota samples☆12May 19, 2021Updated 4 years ago
- Nanopore read de-multiplexer☆13Mar 25, 2020Updated 5 years ago
- "The who the what the huh?" is our pipeline for converting bcl files to fastq and performing QC.☆11Sep 19, 2022Updated 3 years ago
- ☆26Jun 26, 2025Updated 7 months ago
- Whole Exome/Whole Genome Sequencing alignment pipeline☆30Sep 18, 2024Updated last year
- Metagenomic AnalySis with QUantitative pipEline☆12Apr 24, 2019Updated 6 years ago
- ☆12Apr 6, 2021Updated 4 years ago
- Tools for analyzing trees☆13Apr 16, 2025Updated 9 months ago
- Scientific workflow engine designed for simplicity & scalability. Trivially transition between one off use cases to massive scale product…☆12Sep 9, 2025Updated 5 months ago
- iMAP v1.0 (Pre-release): Integrated Microbiome Analysis Pipeline☆13Updated this week
- An automated pipe for reproducible RNA-seq analysis with the minimal efforts from researchers. You only need to provide the taxa name and…☆14Mar 4, 2022Updated 3 years ago
- This pipeline has moved! Please see:☆11Mar 12, 2018Updated 7 years ago
- Demonstrating the PRoot program☆11Jul 29, 2016Updated 9 years ago
- Genomic Assemblies Merger for NGS☆26Nov 10, 2023Updated 2 years ago
- Real-time species-typing visualisation for nanopore data.☆13Apr 11, 2023Updated 2 years ago
- Script for parsing SAM/BAM files for coverage statistics☆16Jun 13, 2023Updated 2 years ago
- SHAMAN is a SHiny application for Metagenomic ANalysis including a bioinformatic workflow, the statistical analysis and multiple visualiz…☆13Feb 5, 2025Updated last year
- The code and distributable for designing minimal microbial communities with specified metabolic functions.☆11Aug 9, 2017Updated 8 years ago
- Mapping NCBI Genbank accession to GTDB accession☆14Feb 13, 2021Updated 5 years ago
- A fast, easy way to present complex bioinformatics pipelines to biologists☆11Sep 28, 2018Updated 7 years ago
- Report salient qPCR primer/probe or immune epitope mismatches info against a set of pathogen isolate genomes☆16Mar 11, 2025Updated 11 months ago
- Implementation of Krona to QIIME2☆16Mar 14, 2024Updated last year
- D3 based visualisation for comparative genomics☆14Oct 6, 2016Updated 9 years ago