jgolob / maliampiLinks
Maximum Likelihood Amplicon Pipeline
☆22Updated last year
Alternatives and similar repositories for maliampi
Users that are interested in maliampi are comparing it to the libraries listed below
Sorting:
- R package for microbiome analysis. Provides helper functions for common workflows ranging from preprocessing to visualization.☆23Updated last year
- tidyMicro GitHup Repository☆18Updated 3 years ago
- ☆27Updated last year
- Handy tools for Microbiome analysis in R☆18Updated 6 years ago
- Analyze a set of genomes with the anvi'o pangenome pipeline☆17Updated last year
- Schloss Lab Tools for Reproducible Microbiome Research 💩☆31Updated last year
- Model-based Genomically Informed High-dimensional Predictor of Microbial Community Metabolic Profiles☆35Updated last year
- Annotation of Metabolite Origin via Networks: A tool for predicting putative metabolite origins for microbes or between microbes and host…☆21Updated last year
- ALDEx_bioc is the working directory for updating bioconductor☆28Updated last month
- A set of R functions that help faciliate a lot of tedious processing☆18Updated 6 years ago
- A comprehensive and customizable R package for microbiome analysis.☆23Updated last week
- hAMRoaster is an analysis pipeline that can compare the output of tools for detecting AMR genes and provide metrics of their performance☆22Updated last year
- Dadaist2 🟨 Highway to R☆13Updated 2 months ago
- Protocols, data and code associated with the MK-SpikeSeq method for quantifying the absolute abundances of microbiota samples☆13Updated 4 years ago
- A shiny package for microbiome functional enrichment analysis☆37Updated last month
- The dysbiosisR package implements tools for calculating some common microbiome dysbiosis measures☆15Updated 2 years ago
- Simple R utilities for working with HMMER☆20Updated 8 months ago
- An HMM and Phylogenetic Placement based Ultra-Fast Taxonomy Assignment Tool for 16S sequencing☆11Updated 3 months ago
- Strain-level abundances estimation in metagenomic samples using variation graphs☆25Updated 2 years ago
- statdivlab's teaching materials for STAMPS @ the MBL in 2019☆12Updated 5 years ago
- Repository for data and code used in the manuscript "Comparison study of differential abundance testing methods using two large Parkinson…☆8Updated 3 years ago
- Materials for the STAMPS 2022 course at the MBL in Woods Hole, MA, USA☆21Updated 2 years ago
- Tools for analyzing trees☆14Updated last month
- Talk to the NCBI EUtils☆22Updated 4 years ago
- Repository for R package MetQy (read related publication here: https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6247936/)☆18Updated 3 years ago
- ☆12Updated 9 months ago
- Phylogenetic Organization of Metagenomic Signals (POMS)☆19Updated 2 years ago
- accessory functions for processing microbial community data☆12Updated 2 years ago
- FishTaco (Functional Shifts Taxonomic Contributors) is a metagenomic computational framework that aims to identify the driver taxa of mic…☆24Updated 3 years ago
- Repository of the integrated mouse gut metagenomic catalog☆20Updated 3 years ago