cmmr / virmap
☆26Updated 4 years ago
Alternatives and similar repositories for virmap:
Users that are interested in virmap are comparing it to the libraries listed below
- OPAL: Open-community Profiling Assessment tooL☆28Updated 2 months ago
- VIRULIGN: fast codon-correct alignment and annotation of viral genomes☆35Updated 4 years ago
- A nextflow pipeline for decontamination of short reads, long reads and contigs☆44Updated 3 months ago
- Trimming tool for Oxford Nanopore sequence data☆21Updated 3 years ago
- Tutorial for bacterial GWAS pipline and bugwas, created for Bodega Bay 2016 NGS workshop☆18Updated 9 years ago
- MutTui pipeline to reconstruct mutational spectra for bacterial and viral datasets☆29Updated 9 months ago
- PhyloCSF++ computes PhyloCSF tracks for whole-genome multiple sequence alignments, scores single MSA, annotates CDS features in GFF/GTF f…☆31Updated 3 years ago
- Protein Alignment and Detection Interface☆61Updated last year
- Rapid and scalable homolog identification for bacterial genomes☆33Updated 5 years ago
- An accurate and ultra-fast adapter and quality trimming program for Illumina Next-Generation Sequencing (NGS) data.☆35Updated 3 weeks ago
- Generate unique KMERs for every contig in a FASTA file☆47Updated 2 years ago
- ShortBRED is a pipeline to take a set of protein sequences, reduce them to a set of unique identifying strings ("markers"), and then sear…☆28Updated 2 months ago
- ☆25Updated last year
- transXpress: a Snakemake pipeline for streamlined de novo transcriptome assembly and annotation☆27Updated last year
- Workflows for metagenomic sequence data processing and analysis.☆17Updated 5 years ago
- Splitting and accelerating the Oxford Nanopore basecaller guppy using CPU with the SLURM job scheduler☆16Updated 9 months ago
- Find Unique genomic Regions☆29Updated 2 weeks ago
- StrainFinder☆26Updated 6 years ago
- A versatile toolkit for k-mers with taxonomic information☆77Updated 8 months ago
- Repository for scripts and resources used for metagenomics with Nanopore, PacBio and Illumina sequencing☆21Updated 2 years ago
- Simple bacterial assembly and annotation pipeline☆73Updated 2 weeks ago
- create a interactive coverage plot dashboard from bam files and add gb, vcf and bed tracks☆44Updated 8 months ago
- Using kallisto for metagenomic analysis☆50Updated 8 years ago
- catalog for long-read sequencing tools☆32Updated 2 years ago
- 🍊 💫 Trim, circularise and orient long read bacterial genome assemblies☆26Updated 5 years ago
- SHOOT.bio - the phylogenetic search engine☆24Updated last year
- mBin: a methylation-based binning framework for metagenomic SMRT sequencing reads☆25Updated 2 years ago
- PanPhlAn is a strain-level metagenomic profiling tool for identifying the gene composition of individual strains in metagenomic samples☆45Updated last year
- Inferring bacterial recombination rates from large-scale sequencing datasets.☆42Updated 2 years ago
- crab go snap snap☆38Updated 2 months ago