cmmr / virmap
☆26Updated 3 years ago
Alternatives and similar repositories for virmap:
Users that are interested in virmap are comparing it to the libraries listed below
- PhyloCSF++ computes PhyloCSF tracks for whole-genome multiple sequence alignments, scores single MSA, annotates CDS features in GFF/GTF f…☆30Updated 2 years ago
- Trimming tool for Oxford Nanopore sequence data☆22Updated 3 years ago
- OPAL: Open-community Profiling Assessment tooL☆27Updated this week
- VIRULIGN: fast codon-correct alignment and annotation of viral genomes☆31Updated 3 years ago
- PanPhlAn is a strain-level metagenomic profiling tool for identifying the gene composition of individual strains in metagenomic samples☆44Updated last year
- Repository for scripts and resources used for metagenomics with Nanopore, PacBio and Illumina sequencing☆21Updated last year
- Protein Alignment and Detection Interface☆61Updated 9 months ago
- mBin: a methylation-based binning framework for metagenomic SMRT sequencing reads☆25Updated 2 years ago
- Tutorial for bacterial GWAS pipline and bugwas, created for Bodega Bay 2016 NGS workshop☆19Updated 8 years ago
- ShortBRED is a pipeline to take a set of protein sequences, reduce them to a set of unique identifying strings ("markers"), and then sear…☆28Updated 9 months ago
- Find Unique genomic Regions☆29Updated last week
- StrainFinder☆27Updated 6 years ago
- transXpress: a Snakemake pipeline for streamlined de novo transcriptome assembly and annotation☆25Updated 10 months ago
- Splitting and accelerating the Oxford Nanopore basecaller guppy using CPU with the SLURM job scheduler☆15Updated 6 months ago
- A package to annotate protein sequences☆54Updated 6 months ago
- create a interactive coverage plot dashboard from bam files and add gb, vcf and bed tracks☆43Updated 5 months ago
- A metagenomic strategy for harnessing the chemical repertoire of the human microbiome☆32Updated last year
- Documentation for Evolview☆26Updated 3 years ago
- MetaCompass: Reference-guided Assembly of Metagenomes☆38Updated 3 years ago
- ☆32Updated last year
- SHOOT.bio - the phylogenetic search engine☆24Updated last year
- MutTui pipeline to reconstruct mutational spectra for bacterial and viral datasets☆28Updated 6 months ago
- Indels are not ideal - quick test for interrupted ORFs in bacterial/microbial genomes☆53Updated last year
- 🍊 💫 Trim, circularise and orient long read bacterial genome assemblies☆26Updated 5 years ago
- Tutorials on how to use the microGVL to do common bacterial bioinformatic tasks☆25Updated 7 months ago
- Multi-platform genome assembly pipeline for Illumina, Nanopore and PacBio reads☆58Updated 4 months ago
- catalog for long-read sequencing tools☆32Updated last year
- SynTracker is a pipeline, designated to determine the biological relatedness of conspecific strains (microbial strains of the same specie…☆25Updated 2 months ago
- A versatile toolkit for k-mers with taxonomic information☆76Updated 5 months ago
- ☆23Updated last year