Alternatives and similar repositories for LucaProt

Users that are interested in LucaProt are comparing it to the libraries listed below

• LucaOne / LucaOneTasks
  The project of the downstream tasks based on LucaOne's Embedding.
  ☆70Updated this week
• LucaOne / LucaOne
  The resources of LucaOne, including: the model code, training scripts, embedding inference code, and trained checkpoints.
  ☆354Updated last week
• LucaOne / LucaOneApp
  LucaOne’s representational inference code. Use this project for embedding inference.
  ☆66Updated last week
• LucaOne / LucaProt
  LucaProt: A novel deep learning framework that incorporates protein amino acid sequence and structural information to predict protein fun…
  ☆30Updated last year
• lingxusb / megaDNA
  ☆75Updated last year
• LucaOne / LucaVirus
  LucaVirus: Modeling the Evolutionary and Functional Landscape of Viruses with a Unified Genome-Protein Language Model
  ☆59Updated this week
• ychuest / Awesome-LLMs-meet-genomes
  Explore a comprehensive collection of basic theories, applications, papers, and best practices about Large Language Models (LLMs) in geno…
  ☆120Updated 3 weeks ago
• LucaOne / AMANet
  KDD '20: Proceedings of the 26th ACM SIGKDD International Conference on Knowledge Discovery & Data Mining: Attention and Memory-Augmente…
  ☆28Updated last year
• MAGICS-LAB / DNABERT_S
  [ISMB 2025] DNABERT_S: Learning Species-Aware DNA Embedding with Genome Foundation Models
  ☆120Updated 2 weeks ago
• ml4bio / Dense-Homolog-Retrieval
  Nature Biotechnology: Ultra-fast, sensitive detection of protein remote homologs using deep dense retrieval
  ☆121Updated last year
• fteufel / signalp-6.0
  Multi-class signal peptide prediction and structure decoding model.
  ☆102Updated 11 months ago
• rcedgar / muscle
  Multiple sequence and structure alignment with top benchmark scores scalable to thousands of sequences. Generates replicate alignments, e…
  ☆265Updated 3 weeks ago
• songlab-cal / gpn
  Genomic Pre-trained Network
  ☆318Updated this week
• Merck / deepbgc
  BGC Detection and Classification Using Deep Learning
  ☆157Updated 2 years ago
• lingxusb / Riboformer
  ☆24Updated 7 months ago
• mayuefine / c_AMPs-prediction
  ☆90Updated 3 years ago
• antismash / antismash
  antiSMASH
  ☆239Updated last month
• DessimozLab / fold_tree
  snakemake pipeline for creating trees from sequence sets
  ☆95Updated 2 months ago
• IndexThePlanet / Logan
  Logan Unitigs and Contigs
  ☆181Updated 4 months ago
• ntranoslab / esm-variants
  ☆85Updated 2 years ago
• althonos / pyhmmer
  Cython bindings and Python interface to HMMER3.
  ☆155Updated this week
• moshi4 / pyMSAviz
  MSA(Multiple Sequence Alignment) visualization python package for sequence analysis
  ☆172Updated last year
• refresh-bio / FAMSA
  Algorithm for ultra-scale multiple sequence alignments (3M protein sequences in 5 minutes and 24 GB of RAM)
  ☆217Updated last week
• nf-core / proteinfold
  Protein 3D structure prediction pipeline
  ☆95Updated this week
• steineggerlab / foldmason
  Multiple Protein Structure Alignment at Scale with FoldMason
  ☆206Updated 3 months ago
• ebi-pf-team / interproscan
  Genome-scale protein function classification
  ☆362Updated last week
• HUST-NingKang-Lab / BGC-Prophet
  A deep learning approach that leverages language processing neural network model to accurately identify known BGCs and extrapolate novel …
  ☆25Updated last week
• LinearDesignSoftware / LinearDesign
  The LinearDesign mRNA design software.
  ☆198Updated last year
• y-hwang / gLM
  Genomic language model predicts protein co-regulation and function
  ☆85Updated 10 months ago
• WangLabTHU / deepseed
  ☆32Updated last year