Alternatives and similar repositories for Snekmer

Users that are interested in Snekmer are comparing it to the libraries listed below

• Finn-Lab / SanntiS
  SMBGC Annotation using Neural Networks Trained on Interpro Signatures
  ☆29Updated 7 months ago
• althonos / pyrodigal-gv
  A Pyrodigal extension to predict genes in giant viruses and viruses with alternative genetic code.
  ☆20Updated 3 months ago
• JoanaMPereira / GCsnap
  GCsnap: interactive snapshots for the comparison of protein-coding genomic contexts
  ☆33Updated last year
• gamcil / clustermap.js
  ☆31Updated 4 years ago
• BolognaBiocomp / deepsig
  DeepSig - Predictor of signal peptides in proteins based on deep learning
  ☆26Updated 2 years ago
• JLSteenwyk / orthohmm
  Improved Inference of Ortholog Groups using Hidden Markov Models
  ☆37Updated 2 months ago
• bioforensics / pytaxonkit
  Python bindings for the TaxonKit library
  ☆41Updated 4 months ago
• Arcadia-Science / 2023-nr-clustering
  Clustering the NCBI nr database with mmseq2 (90% length, 90% identity). Inspired by the NCBI's experimental ClusteredNR database.
  ☆23Updated last week
• KoslickiLab / MetagenomicKG
  ☆17Updated last week
• steineggerlab / unicore
  Universal and efficient structure-based core gene phylogeny with Foldseek and ProstT5
  ☆78Updated this week
• salzberg-lab / Balrog
  Bacterial Annotation by Learned Representation of Genes
  ☆58Updated 4 years ago
• songlab-cal / CherryML
  Scalable Maximum Likelihood Estimation of Phylogenetic Models
  ☆18Updated 8 months ago
• ablab / nerpa
  ☆17Updated 8 months ago
• althonos / pyfastani
  Cython bindings and Python interface to FastANI, a method for fast whole-genome similarity estimation.
  ☆23Updated last month
• kshulgina / codetta
  ☆52Updated 6 months ago
• djw533 / hamburger
  HMmer Based UndeRstandinG of gene clustERs
  ☆15Updated 5 months ago
• Kalan-Lab / codoff
  codoff: a program to measure the irregularity of the codon usage for a single genomic region (e.g. a BGC, prophage, etc.) relative to the…
  ☆13Updated last week
• batmen-lab / SGPvalue
  ☆13Updated last year
• TravisWheelerLab / nail
  Nail is an Alignment Inference tooL
  ☆53Updated last month
• qiyunlab / binarena
  BinaRena: Interactive Visualization and Binning of Metagenomic Contigs
  ☆32Updated last year
• Kalan-Lab / lsaBGC
  lsaBGC - Lineage Specific Analysis of Biosynthetic Gene Clusters
  ☆38Updated last month
• EBI-Metagenomics / emg-toolkit
  MGnify API toolkit
  ☆19Updated 9 months ago
• althonos / pytrimal
  Cython bindings and Python interface to trimAl, a tool for automated alignment trimming. Now with SIMD!
  ☆27Updated 2 months ago
• GCA-VH-lab / FlaGs
  ☆19Updated 3 years ago
• moshi4 / phyTreeViz
  Simple phylogenetic tree visualization python package for phylogenetic analysis
  ☆60Updated last year
• althonos / pysylph
  PyO3 bindings and Python interface to sylph, an ultrafast method for containment ANI querying and taxonomic profiling.
  ☆20Updated 11 months ago
• jolespin / pykofamsearch
  Fast implementation of KofamScan optimized for high-memory systems using PyHMMER
  ☆14Updated 2 months ago
• PAiewsakun / GRAViTy
  ☆17Updated 3 years ago
• nf-core / proteinfamilies
  Generation and updating of protein families
  ☆21Updated this week
• gamcil / synthaser
  Parse NCBI CD-search results to find and visualise the domain architecture of secondary metabolite synthases
  ☆23Updated 3 years ago