Pipeline to apply encoded Kmer analysis to protein sequences
☆16May 15, 2026Updated last week
Alternatives and similar repositories for Snekmer
Users that are interested in Snekmer are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Python library for identification and masking of low-complexity regions in nucleotide sequences☆13Mar 27, 2026Updated last month
- ☆16Jan 21, 2024Updated 2 years ago
- Fast implementation of KofamScan optimized for high-memory systems using PyHMMER☆18Jan 13, 2026Updated 4 months ago
- flexible pipelines for scalable secretome prediction, R package☆12Feb 21, 2019Updated 7 years ago
- Scripts, HMMs and search databases for identifying and classifying viral RdRp sequences☆13May 17, 2026Updated last week
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Just another minhash implementation.☆12May 7, 2026Updated 2 weeks ago
- LLM-based gene function enrichment tool☆18Feb 19, 2025Updated last year
- Bacterial Annotation by Learned Representation of Genes☆60Mar 26, 2026Updated last month
- Plugin that provides pairing functions to the Polars library☆14Feb 14, 2025Updated last year
- Snakemake-based amplicon processing protocol for 16S and ITS sequences.☆13Mar 18, 2024Updated 2 years ago
- the Metagenomic test for Presence Or Absence of Pathways☆13Mar 4, 2019Updated 7 years ago
- ☆34Oct 6, 2025Updated 7 months ago
- Working with the outputs of sourmash in R☆29Jan 15, 2026Updated 4 months ago
- A motley crew of agents developed by the Monarch Initiative☆25Nov 17, 2025Updated 6 months ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- High-level analysis package for (bio-)informatics☆11Feb 27, 2024Updated 2 years ago
- R Data Exploration for Serratus☆16Mar 29, 2023Updated 3 years ago
- ClaMSA (Classify Multiple Sequence Alignments).☆13Nov 21, 2024Updated last year
- CLI tool for finding gene clusters in many genomes and placing them in discrete groups based on gene content similarity.☆18Nov 6, 2024Updated last year
- Viroid-like circRNA discovery and analysis suite☆19Nov 11, 2023Updated 2 years ago
- CAMISIM: Simulating metagenomes and microbial communities☆225Updated this week
- ☆17Feb 5, 2026Updated 3 months ago
- ☆19Dec 6, 2022Updated 3 years ago
- Fast and accurate Average Genome Size and 16S rRNA gene Average Copy Number computation in metagenomic data☆16Dec 20, 2024Updated last year
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Utility to analyse a group of closely related MAgs/Genomes/bins/SUBs of more or less dubious origin☆15Sep 24, 2024Updated last year
- EMERALD calculates safety-windows by exploring the suboptimal alignment space☆17Jan 13, 2026Updated 4 months ago
- fast, multithreaded sourmash operations: search, compare, and gather.☆25May 11, 2026Updated 2 weeks ago
- A Pyrodigal extension to predict genes in giant viruses and viruses with alternative genetic code.☆23Nov 25, 2025Updated 6 months ago
- The Ross-Ibarra's lab documentation☆27Aug 4, 2022Updated 3 years ago
- A functional profiler for metagenomes using FracMinHash☆21Apr 20, 2026Updated last month
- NCBI taxonomy tree in-memory mapping☆17Oct 20, 2022Updated 3 years ago
- a tree splitting and pruning algorithm for retrieving single-copy orthologs from gene family trees☆30Feb 23, 2026Updated 3 months ago
- ☆18Nov 7, 2025Updated 6 months ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- Code to generate re-assemblies of the Marine Microbial Eukaryote Transcriptome Sequencing Project (MMETSP)☆23Apr 14, 2019Updated 7 years ago
- PyO3 bindings and Python interface to sylph, an ultrafast method for containment ANI querying and taxonomic profiling.☆21Dec 12, 2024Updated last year
- ☆15Apr 1, 2024Updated 2 years ago
- Approximate nearest neighbour search for microbial genomes based on hash metric☆66Mar 7, 2026Updated 2 months ago
- RabbitMash: an efficient highly optimized implementation of Mash.☆20Oct 28, 2023Updated 2 years ago
- geNomad: Identification of mobile genetic elements☆313Mar 29, 2026Updated last month
- Shell bootloader for data science.☆10Updated this week