Alternatives and similar repositories for Snekmer:

Users that are interested in Snekmer are comparing it to the libraries listed below

• gamcil / clustermap.js
  ☆31Updated 3 years ago
• Finn-Lab / SanntiS
  SMBGC Annotation using Neural Networks Trained on Interpro Signatures
  ☆24Updated this week
• bioforensics / pytaxonkit
  Python bindings for the TaxonKit library
  ☆33Updated last month
• peng-ye / MetaPGN
  A pipeline for construction and graphical visualization of annotated pangenome networks.
  ☆17Updated 6 years ago
• phac-nml / gview-wiki
  The gview wiki migrated to GitHub.
  ☆10Updated 4 years ago
• BolognaBiocomp / deepsig
  DeepSig - Predictor of signal peptides in proteins based on deep learning
  ☆26Updated last year
• Arcadia-Science / 2023-nr-clustering
  Clustering the NCBI nr database with mmseq2 (90% length, 90% identity). Inspired by the NCBI's experimental ClusteredNR database.
  ☆23Updated last year
• ablab / nerpa
  ☆15Updated 11 months ago
• JLSteenwyk / orthohmm
  Improved Inference of Ortholog Groups using Hidden Markov Models
  ☆32Updated last month
• steineggerlab / unicore
  Universal and efficient core gene phylogeny with Foldseek and ProstT5
  ☆48Updated last week
• TravisWheelerLab / nail
  Nail is an Alignment Inference tooL
  ☆44Updated 3 weeks ago
• TheSEED / RASTtk-Distribution
  KBase distribution module for RASTtk.
  ☆13Updated 4 years ago
• pereiramemo / BiG-MEx
  BiG-MEx implementation as Docker images and R packages
  ☆12Updated 3 years ago
• KoslickiLab / MetagenomicKG
  ☆13Updated 8 months ago
• althonos / pyrodigal-gv
  A Pyrodigal extension to predict genes in giant viruses and viruses with alternative genetic code.
  ☆15Updated 6 months ago
• NBChub / bgcflow
  Snakemake workflow for the analysis of biosynthetic gene clusters across large collections of genomes (pangenomes)
  ☆39Updated last month
• PAiewsakun / GRAViTy
  ☆17Updated 2 years ago
• marbl / binnacle
  Binnacle: Using Scaffolds to Improve the Contiguity and Quality of Metagenomic Bins
  ☆13Updated 3 years ago
• qiyunlab / binarena
  BinaRena: Interactive Visualization and Binning of Metagenomic Contigs
  ☆31Updated 6 months ago
• SushiLab / mVIRs
  ☆13Updated 11 months ago
• althonos / pymuscle5
  Cython bindings and Python interface to MUSCLE v5, a highly efficient and accurate multiple sequence alignment software.
  ☆20Updated 9 months ago
• rcedgar / palmdb
  Database of virus RdRP barcode sequences
  ☆15Updated 7 months ago
• bhattlab / SmORFinder
  A command line tool to identify and annotate small proteins in microbial sequencing datasets.
  ☆19Updated last year
• RogerLab / Eukfinder
  Eukfinder: A pipeline to retrieve microbial eukaryote genomes from metagenomic sequencing data
  ☆16Updated last week
• GCA-VH-lab / FlaGs
  ☆19Updated 2 years ago
• EBI-Metagenomics / emg-toolkit
  MGnify API toolkit
  ☆21Updated 3 weeks ago
• wclose / viralMetagenomicsPipeline
  Pipeline for metagenomic community analysis using DNA isolated from virus-like particles
  ☆12Updated 4 years ago
• sourmash-bio / mastiff
  ☆16Updated last year
• redsnic / WGA-LP
  A pipeline for whole genome assembly
  ☆16Updated 2 years ago
• cjneely10 / MetaSanity
  Pipeline for major biological analyses.
  ☆34Updated 2 years ago