Alternatives and similar repositories for Snekmer

Users that are interested in Snekmer are comparing it to the libraries listed below

• Finn-Lab / SanntiS
  SMBGC Annotation using Neural Networks Trained on Interpro Signatures
  ☆27Updated 2 months ago
• althonos / pyrodigal-gv
  A Pyrodigal extension to predict genes in giant viruses and viruses with alternative genetic code.
  ☆17Updated 10 months ago
• gamcil / clustermap.js
  ☆31Updated 3 years ago
• Arcadia-Science / 2023-nr-clustering
  Clustering the NCBI nr database with mmseq2 (90% length, 90% identity). Inspired by the NCBI's experimental ClusteredNR database.
  ☆23Updated 2 years ago
• ablab / nerpa
  ☆16Updated 3 months ago
• steineggerlab / unicore
  Universal and efficient core gene phylogeny with Foldseek and ProstT5
  ☆67Updated last week
• althonos / pysylph
  PyO3 bindings and Python interface to sylph, an ultrafast method for containment ANI querying and taxonomic profiling.
  ☆18Updated 6 months ago
• qiyunlab / binarena
  BinaRena: Interactive Visualization and Binning of Metagenomic Contigs
  ☆32Updated 10 months ago
• KoslickiLab / MetagenomicKG
  ☆15Updated 2 months ago
• jolespin / pykofamsearch
  Fast implementation of KofamScan optimized for high-memory systems using PyHMMER
  ☆11Updated 7 months ago
• althonos / pyfastani
  Cython bindings and Python interface to FastANI, a method for fast whole-genome similarity estimation.
  ☆22Updated 2 months ago
• Kalan-Lab / codoff
  codoff: a program to measure the irregularity of the codon usage for a single genomic region (e.g. a BGC, phage, etc.) relative to the fu…
  ☆11Updated 2 months ago
• pereiramemo / BiG-MEx
  BiG-MEx implementation as Docker images and R packages
  ☆13Updated 3 years ago
• bioforensics / pytaxonkit
  Python bindings for the TaxonKit library
  ☆41Updated last month
• NeLLi-team / gvclass
  ☆15Updated last month
• PAiewsakun / GRAViTy
  ☆17Updated 3 years ago
• rotheconrad / KEGGDecoder-binder
  metabolic heatmap
  ☆20Updated 6 years ago
• BolognaBiocomp / deepsig
  DeepSig - Predictor of signal peptides in proteins based on deep learning
  ☆26Updated 2 years ago
• GCA-VH-lab / FlaGs
  ☆19Updated 2 years ago
• FischbachLab / ninjaMap
  Compute strain abundance in a defined microbial community
  ☆10Updated last year
• cjneely10 / MetaSanity
  Pipeline for major biological analyses.
  ☆35Updated 3 years ago
• wclose / viralMetagenomicsPipeline
  Pipeline for metagenomic community analysis using DNA isolated from virus-like particles
  ☆12Updated 5 years ago
• marbl / binnacle
  Binnacle: Using Scaffolds to Improve the Contiguity and Quality of Metagenomic Bins
  ☆13Updated 3 years ago
• phac-nml / gview-wiki
  The gview wiki migrated to GitHub.
  ☆11Updated 4 years ago
• EBI-Metagenomics / kegg-pathways-completeness-tool
  ☆22Updated 4 months ago
• NickJD / ORForise
  Comparison pipeline for Prokaryote Protein Coding Gene Predictors
  ☆23Updated this week
• althonos / pytrimal
  Cython bindings and Python interface to trimAl, a tool for automated alignment trimming. Now with SIMD!
  ☆25Updated last month
• timghaly / EcoFoldDB
  Database and pipeline for protein structure-guided annotations of ecologically relevant functions at the metagenome scale.
  ☆16Updated 2 months ago
• nlm-irp-jianglab / ProkFunFind
  🦠 A tool for identifying and analyzing functions in microbial genomes.
  ☆14Updated 9 months ago
• sourmash-bio / mastiff
  ☆16Updated last year