PNNL-CompBio / Snekmer
Pipeline to apply encoded Kmer analysis to protein sequences
☆16Updated 3 weeks ago
Alternatives and similar repositories for Snekmer:
Users that are interested in Snekmer are comparing it to the libraries listed below
- SMBGC Annotation using Neural Networks Trained on Interpro Signatures☆26Updated 3 weeks ago
- A Pyrodigal extension to predict genes in giant viruses and viruses with alternative genetic code.☆17Updated 7 months ago
- Python bindings for the TaxonKit library☆35Updated 2 months ago
- BiG-MEx implementation as Docker images and R packages☆13Updated 3 years ago
- ☆31Updated 3 years ago
- Improved Inference of Ortholog Groups using Hidden Markov Models☆33Updated 3 weeks ago
- ☆13Updated 9 months ago
- Fast implementation of KofamScan optimized for high-memory systems using PyHMMER☆11Updated 4 months ago
- Snakemake workflow for the analysis of biosynthetic gene clusters across large collections of genomes (pangenomes)☆41Updated 3 months ago
- codoff: a program to measure the irregularity of the codon usage for a single genomic region (e.g. a BGC, phage, etc.) relative to the fu…☆11Updated 7 months ago
- A pipeline for construction and graphical visualization of annotated pangenome networks.☆17Updated 6 years ago
- The gview wiki migrated to GitHub.☆11Updated 4 years ago
- Universal and efficient core gene phylogeny with Foldseek and ProstT5☆54Updated this week
- a python package for automated generation of phylogenetic trees from genbank files☆20Updated 2 weeks ago
- KBase distribution module for RASTtk.☆13Updated 4 years ago
- Nail is an Alignment Inference tooL☆45Updated 2 months ago
- Reference Phylogeny for Bacterial and Archaeal Genomes☆25Updated 2 years ago
- Clustering the NCBI nr database with mmseq2 (90% length, 90% identity). Inspired by the NCBI's experimental ClusteredNR database.☆23Updated last year
- TransAnnot - a fast transcriptome annotation pipeline☆14Updated 2 months ago
- ☆16Updated last year
- Pipeline for metagenomic community analysis using DNA isolated from virus-like particles☆12Updated 5 years ago
- BinaRena: Interactive Visualization and Binning of Metagenomic Contigs☆31Updated 7 months ago
- Comparison pipeline for Prokaryote Protein Coding Gene Predictors☆23Updated 11 months ago
- From metagenomes to epitopes and beyond☆11Updated 2 months ago
- ☆17Updated 2 months ago
- screening metagenomes for arbitrary lineages, using gene-centric assembly methods and phylogenetics☆11Updated 4 years ago
- Scripts used in the publication Tyler P. Barnum, Israel A. Figueroa, Charlotte I. Carlström, Lauren N. Lucas, Anna L. Engelbrektson, and …☆10Updated 5 years ago
- GRIMER performs analysis of microbiome studies and generates a portable and interactive dashboard integrating annotation, taxonomy and me…☆22Updated 2 years ago
- ☆13Updated 2 months ago
- ☆29Updated 2 weeks ago