Alternatives and similar repositories for Snekmer

Users that are interested in Snekmer are comparing it to the libraries listed below

• gamcil / clustermap.js
  ☆31Updated 3 years ago
• Finn-Lab / SanntiS
  SMBGC Annotation using Neural Networks Trained on Interpro Signatures
  ☆27Updated 3 months ago
• JLSteenwyk / orthohmm
  Improved Inference of Ortholog Groups using Hidden Markov Models
  ☆37Updated 5 months ago
• KoslickiLab / MetagenomicKG
  ☆16Updated 3 months ago
• althonos / pyrodigal-gv
  A Pyrodigal extension to predict genes in giant viruses and viruses with alternative genetic code.
  ☆17Updated 11 months ago
• bioforensics / pytaxonkit
  Python bindings for the TaxonKit library
  ☆41Updated last month
• kshulgina / codetta
  ☆50Updated 3 months ago
• steineggerlab / unicore
  Universal and efficient structure-based core gene phylogeny with Foldseek and ProstT5
  ☆70Updated last month
• BolognaBiocomp / deepsig
  DeepSig - Predictor of signal peptides in proteins based on deep learning
  ☆26Updated 2 years ago
• vinisalazar / metaphor
  Metaphor: a general-purpose workflow for assembly and binning of metagenomes
  ☆39Updated 8 months ago
• salzberg-lab / Balrog
  Bacterial Annotation by Learned Representation of Genes
  ☆57Updated 4 years ago
• jonas-fuchs / BAMdash
  create a interactive coverage plot dashboard from bam files and add gb, vcf and bed tracks
  ☆54Updated last month
• ablab / nerpa
  ☆16Updated 4 months ago
• GCA-VH-lab / FlaGs
  ☆19Updated 2 years ago
• althonos / pytrimal
  Cython bindings and Python interface to trimAl, a tool for automated alignment trimming. Now with SIMD!
  ☆27Updated 3 months ago
• Kalan-Lab / codoff
  codoff: a program to measure the irregularity of the codon usage for a single genomic region (e.g. a BGC, prophage, etc.) relative to the…
  ☆12Updated last week
• althonos / pymuscle5
  Cython bindings and Python interface to MUSCLE v5, a highly efficient and accurate multiple sequence alignment software.
  ☆23Updated last year
• wclose / viralMetagenomicsPipeline
  Pipeline for metagenomic community analysis using DNA isolated from virus-like particles
  ☆12Updated 5 years ago
• JoanaMPereira / GCsnap
  GCsnap: interactive snapshots for the comparison of protein-coding genomic contexts
  ☆30Updated last year
• songlab-cal / CherryML
  Scalable Maximum Likelihood Estimation of Phylogenetic Models
  ☆16Updated 5 months ago
• NBChub / bgcflow
  Snakemake workflow for the analysis of biosynthetic gene clusters across large collections of genomes (pangenomes)
  ☆44Updated 7 months ago
• soedinglab / transannot
  TransAnnot - a fast transcriptome annotation pipeline
  ☆18Updated 6 months ago
• TravisWheelerLab / nail
  Nail is an Alignment Inference tooL
  ☆50Updated this week
• sourmash-bio / mastiff
  ☆16Updated last year
• biocore / wol
  Reference Phylogeny for Bacterial and Archaeal Genomes
  ☆25Updated 2 years ago
• qiyunlab / binarena
  BinaRena: Interactive Visualization and Binning of Metagenomic Contigs
  ☆32Updated 11 months ago
• NeLLi-team / gvclass
  ☆16Updated 2 weeks ago
• peterk87 / nf-flu
  Influenza genome analysis Nextflow workflow
  ☆28Updated last week
• althonos / pysylph
  PyO3 bindings and Python interface to sylph, an ultrafast method for containment ANI querying and taxonomic profiling.
  ☆18Updated 7 months ago
• althonos / pyfastani
  Cython bindings and Python interface to FastANI, a method for fast whole-genome similarity estimation.
  ☆23Updated 2 weeks ago