tmrcpsu / bacseqLinks
☆10Updated 7 months ago
Alternatives and similar repositories for bacseq
Users that are interested in bacseq are comparing it to the libraries listed below
Sorting:
- Quality control plotting for long reads☆10Updated last year
- Workflows for metagenomic sequence data processing and analysis.☆16Updated 6 years ago
- de.NBI Nanopore Training Course☆20Updated 6 months ago
- Hands-on workflow for learning metagenomics including DNA mapping, binning, QC and annotation. Answers and example code available in the…☆13Updated 3 years ago
- VGEA (Viral Genomes Easily Analyzed) is a pipeline for analysis of RNA virus next-generation sequencing data.☆20Updated 4 years ago
- Set of utilities on sequences and BAM files☆26Updated 4 years ago
- Repository for scripts and resources used for metagenomics with Nanopore, PacBio and Illumina sequencing☆21Updated 2 years ago
- PanPhlAn is a strain-level metagenomic profiling tool for identifying the gene composition of individual strains in metagenomic samples☆46Updated 2 years ago
- catalog for long-read sequencing tools☆32Updated 2 years ago
- SISTR (Salmonella In Silico Typing Resource) command-line tool☆32Updated 8 months ago
- whole genome MLST analysis☆50Updated 6 months ago
- Phylogeny Enhanded Prediction of PAN-genome☆43Updated 5 years ago
- PATO is a R package designed to analyze pangenomes (set of genomes) intra or inter species.☆62Updated 2 years ago
- Improve the quality of a denovo assembly by scaffolding and gap filling☆57Updated 5 years ago
- 🔬🐛 Rapid 16s rRNA identification from isolate FASTQ files☆24Updated 7 years ago
- A repository for the lessons and notebooks used for Binder tutorials☆15Updated 5 years ago
- Workflow to prepare high accuracy single molecule consensus sequences from amplicon data using unique molecular identifiers☆35Updated last year
- Assembly and scaffolding of haploid / unphased genomes from long ONT or PacBio HiFi reads☆31Updated last month
- Bash pipeline for analysis of ONT full-length 16S sequences in QIIME2☆29Updated 5 years ago
- This repository contains R code for building a heatmap and histogram with the output of FastANI☆18Updated 4 years ago
- Accurate metagenomi/metatranscriptomic analysis pipeline☆23Updated 4 years ago
- Remove lambda phage reads from a fastq file☆29Updated 2 years ago
- A Nextflow full-length 16S profiling pipeline for ONT reads☆25Updated 2 years ago
- MutTui pipeline to reconstruct mutational spectra for bacterial and viral datasets☆33Updated last year
- Bacterial GWAS analysis☆46Updated 2 months ago
- Kraken output generates a report for each datasets, this script takes these individual output and combines it to one file, where each col…☆24Updated last year
- Gene-flank analysis tool☆34Updated last year
- tools for assessing the accuracy of genome assemblies☆35Updated last year
- InterARTIC - An interactive local web application for viral whole genome sequencing utilising the artic network pipelines..☆31Updated 2 years ago
- ☆41Updated 4 years ago