tmrcpsu / bacseqLinks
☆10Updated 6 months ago
Alternatives and similar repositories for bacseq
Users that are interested in bacseq are comparing it to the libraries listed below
Sorting:
- PanPhlAn is a strain-level metagenomic profiling tool for identifying the gene composition of individual strains in metagenomic samples☆46Updated 2 years ago
- VGEA (Viral Genomes Easily Analyzed) is a pipeline for analysis of RNA virus next-generation sequencing data.☆20Updated 4 years ago
- Repository for scripts and resources used for metagenomics with Nanopore, PacBio and Illumina sequencing☆21Updated 2 years ago
- Workflows for metagenomic sequence data processing and analysis.☆16Updated 6 years ago
- Pangenome analysis of eukaryotes.☆20Updated 5 years ago
- catalog for long-read sequencing tools☆32Updated 2 years ago
- Quality control plotting for long reads☆10Updated last year
- Phylogeny Enhanded Prediction of PAN-genome☆43Updated 5 years ago
- PATO is a R package designed to analyze pangenomes (set of genomes) intra or inter species.☆62Updated 2 years ago
- Assembly and scaffolding of haploid / unphased genomes from long ONT or PacBio HiFi reads☆30Updated this week
- de.NBI Nanopore Training Course☆20Updated 5 months ago
- PlasmidID is a mapping-based, assembly-assisted plasmid identification tool that analyzes and gives graphic solution for plasmid identifi…☆41Updated 4 years ago
- Mash MinHash search your nucleotide sequences against a NCBI RefSeq genomes database☆42Updated 4 years ago
- A repository for the lessons and notebooks used for Binder tutorials☆14Updated 5 years ago
- whole genome MLST analysis☆49Updated 5 months ago
- MegaPath-Nano: Accurate Compositional Analysis and Drug-level Antimicrobial Resistance Detection Software for Oxford Nanopore Long-read M…☆14Updated 3 years ago
- Read mapping pipeline for detection and measurement of virus pathogens from metagenomic or clinical data☆44Updated last month
- In-depth characterization and annotation of differences between two sets of DNA sequences☆63Updated 5 years ago
- Multi-platform genome assembly pipeline for Illumina, Nanopore and PacBio reads☆63Updated last year
- A toolkit for prokaryotic comparative genomics☆51Updated last month
- 🔬🐛 Rapid 16s rRNA identification from isolate FASTQ files☆24Updated 7 years ago
- Spaghetti: in situ analysis of 16S rRNA amplicons obtained by nanopore sequencing☆19Updated last year
- HoCoRT - Remove specific organisms from sequencing reads☆17Updated 10 months ago
- tools for assessing the accuracy of genome assemblies☆35Updated last year
- Set of utilities on sequences and BAM files☆26Updated 4 years ago
- SISTR (Salmonella In Silico Typing Resource) command-line tool☆31Updated 6 months ago
- Workflow to prepare high accuracy single molecule consensus sequences from amplicon data using unique molecular identifiers☆34Updated last year
- hecatomb is a virome analysis pipeline for analysis of Illumina sequence data☆59Updated last month
- InterARTIC - An interactive local web application for viral whole genome sequencing utilising the artic network pipelines..☆31Updated last year
- Hands-on workflow for learning metagenomics including DNA mapping, binning, QC and annotation. Answers and example code available in the…☆13Updated 3 years ago