KatyBrown / plot_phyloLinks
Python package to plot a phylogenetic tree on an existing matplotlib axis.
☆22Updated 4 months ago
Alternatives and similar repositories for plot_phylo
Users that are interested in plot_phylo are comparing it to the libraries listed below
Sorting:
- Strain-level haplotyping for metagenomes with short or long-reads.☆52Updated 3 months ago
- Phylogenetic compression of extremely large genome collections [661k ↘𝟭𝟲𝗚𝗶𝗕 | BIGSIdata ↘𝟰𝟴𝗚𝗶𝗕 | AllTheBact'23 ↘𝟳𝟱𝗚𝗶𝗕]☆37Updated 3 months ago
- Genome size estimation from long read overlaps☆58Updated last week
- Fast implementation of KofamScan optimized for high-memory systems using PyHMMER☆12Updated 8 months ago
- PyO3 bindings and Python interface to sylph, an ultrafast method for containment ANI querying and taxonomic profiling.☆18Updated 7 months ago
- ☆24Updated 5 months ago
- Phylogenetic maximum representation sampling: choosing most representative strains or taxa☆38Updated 3 months ago
- skDER & CiDDER: efficient & high-resolution dereplication of microbial genomes.☆45Updated this week
- Mandrake 🌿/👨🔬🦆 – Fast visualisation of the population structure of pathogens using Stochastic Cluster Embedding☆38Updated 4 months ago
- Alignment against all pre-2019 bacteria on laptops within a few hours (former MOF-Search)☆36Updated last year
- Microbial agile accurate SNP Typer☆30Updated last year
- PanTax: Strain-level metagenomic profiling using pangenome graphs☆39Updated last week
- A Python implementation of the OrthoANI algorithm for nucleotide identity measurement.☆31Updated 3 months ago
- A mathematically characterized hypothesis test for organism presence/absence in a metagenome☆30Updated last month
- Microbial Genome Circular plotting tool for comparative genomics using Circos☆38Updated 2 years ago
- PyO3 bindings and Python interface to skani, a method for fast genomic identity calculation using sparse chaining.☆27Updated 2 months ago
- Automated strain separation of low-complexity metagenomes☆51Updated 3 years ago
- Cython bindings and Python interface to FastANI, a method for fast whole-genome similarity estimation.☆22Updated 3 months ago
- A new high-resolution long-read metagenome assembler for even noisy reads☆74Updated last month
- Fast pairwise transmission inference from single genome and/or metagenomic data☆21Updated 9 months ago
- Fast and space-efficient taxonomic classification of long reads☆43Updated 2 months ago
- RabbitTClust: enabling fast clustering analysis of millions bacteria genomes with MinHash sketches☆46Updated 2 months ago
- Jaeger is a quick and precise tool for detecting phages in sequence assemblies.☆32Updated 2 weeks ago
- Bacterial GWAS analysis☆42Updated this week
- Recombination-free trees☆58Updated 3 months ago
- Resolving Species Level Classification Using Emu☆13Updated last year
- frame-shift correction for long-read (meta)genomics☆34Updated last year
- Miscellaneous Perl scripts from 20 years in microbial bioinformatics☆17Updated last year
- ViromeQC is a computational tool to benchmark and quantify non-viral contamination in VLP-enrihed viromes. ViromeQC provides an enrichmen…☆19Updated 2 years ago
- ☆50Updated 2 months ago