Codon Usage Analysis and Prediction of Gene Expressivity
☆23Jan 2, 2019Updated 7 years ago
Alternatives and similar repositories for coRdon
Users that are interested in coRdon are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Pipeline for automatic processing and quality control of mass spectrometry data☆14Jan 30, 2025Updated last year
- Python package to plot a phylogenetic tree on an existing matplotlib axis.☆29Jul 21, 2025Updated last year
- A Pyrodigal extension to predict genes in giant viruses and viruses with alternative genetic code.☆23Nov 25, 2025Updated 8 months ago
- Simple Python program to perform codon optimization or heterology calculations.☆12Apr 13, 2021Updated 5 years ago
- ☆56Mar 29, 2026Updated 3 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- codoff: a program to measure the irregularity of the codon usage for a single genomic region (e.g. a BGC, prophage, etc.) relative to the…☆13Jan 19, 2026Updated 6 months ago
- A series of small Biopython scripts for downloading sequence data off NCBI's Genbank.☆15May 2, 2017Updated 9 years ago
- Scripts, HMMs and search databases for identifying and classifying viral RdRp sequences☆14May 17, 2026Updated 2 months ago
- Pipeline for computing OTU tables from 16S or ITS amplicon sequencing data.☆34Jun 18, 2023Updated 3 years ago
- A pipeline for Bacterial Whole genome sequence data analysis☆15Jul 24, 2022Updated 4 years ago
- RabbitMash: an efficient highly optimized implementation of Mash.☆20Oct 28, 2023Updated 2 years ago
- a multiple sequence alignment-trimming algorithm for accurate phylogenomic inference☆91Jul 17, 2026Updated last week
- TD2☆41May 17, 2026Updated 2 months ago
- A pipeline for the identification of Compound Heterozygous Variants☆10Nov 10, 2022Updated 3 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Protein orthologous group assignment with deep learning☆30Dec 16, 2025Updated 7 months ago
- Pipeline to apply encoded Kmer analysis to protein sequences☆16Jun 22, 2026Updated last month
- Repository of the integrated mouse gut metagenomic catalog☆20Mar 14, 2022Updated 4 years ago
- EMERALD calculates safety-windows by exploring the suboptimal alignment space☆18Jun 15, 2026Updated last month
- TFregulomeR reveals transcription factors’ context-specific features and functions☆15Apr 18, 2022Updated 4 years ago
- Binning Virus Genomes from Metagenomes☆75Jul 13, 2022Updated 4 years ago
- A pipeline for the macro- and micro-diversity analyses and visualization of metagenomic-derived populations☆44Apr 4, 2023Updated 3 years ago
- easy_sbatch - Batch submitting Slurm jobs with script templates☆16Dec 28, 2021Updated 4 years ago
- This contains all the files and scripts necessary to participate in the FTICR-MS data analysis demonstration at the SBR SFA Community Wor…☆18Jul 8, 2020Updated 6 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Searching large collections of sequencing data with genome-scale queries☆19Updated this week
- VGEA (Viral Genomes Easily Analyzed) is a pipeline for analysis of RNA virus next-generation sequencing data.☆20Sep 12, 2021Updated 4 years ago
- Tools for making blobplots or Taxon-Annotated-GC-Coverage plots (TAGC plots) to visualise the contents of genome assembly data sets as a …☆47May 27, 2022Updated 4 years ago
- Renames headers in FASTA file☆13Jun 28, 2017Updated 9 years ago
- Handy tools for Microbiome analysis in R☆18May 22, 2019Updated 7 years ago
- A collection of python and bash scripts for various bioinformatics-related tasks☆12Sep 19, 2024Updated last year
- The R for Mass Spectrometry meta-package☆21May 11, 2026Updated 2 months ago
- Embedding-based indexing for compact storage and rapid querying of bacterial pan-genomes☆22Jul 11, 2026Updated 2 weeks ago
- Bacterial typing pipeline for clinical NGS data. Written in NextFlow, Python & Bash.☆15Jul 6, 2026Updated 2 weeks ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Tool to submit viral sequences to Genbank.☆16May 14, 2026Updated 2 months ago
- A toolbox for comparative genomics.☆110May 26, 2021Updated 5 years ago
- Genome scale metabolic models in SBML format☆11Nov 16, 2021Updated 4 years ago
- Readme☆10Mar 15, 2020Updated 6 years ago
- Quality control plotting for long reads☆10May 14, 2024Updated 2 years ago
- Package to link to CGAL (Computational Geometry Algorithms Library) header files. Downloads CGAL version 6.0.1 on install.☆13Oct 10, 2025Updated 9 months ago
- Cython bindings and Python interface to FastANI, a method for fast whole-genome similarity estimation.☆24Updated this week