broadinstitute / adaptLinks
A package for designing activity-informed nucleic acid diagnostics for viruses.
β35Updated 2 years ago
Alternatives and similar repositories for adapt
Users that are interested in adapt are comparing it to the libraries listed below
Sorting:
- 𧬠MSABrowser: dynamic and fast visualization of sequence alignments, variations, and annotationsβ35Updated last year
- programs and scripts, mainly python, for analyses related to nucleic or protein sequencesβ24Updated 2 months ago
- Tool package to perform in-silico CRISPR analysis and assessmentβ34Updated 2 months ago
- Hybridization probe design for targeted genomic sequencing of diverse and hypervariable viral taxaβ25Updated 2 years ago
- Python bindings for the TaxonKit libraryβ42Updated this week
- POSTRE: Prediction Of STRuctural variant Effectsβ28Updated last week
- Metagenome analysis using the Kraken software suiteβ36Updated 3 years ago
- MetaLogo: a heterogeneity-aware sequence logo generator and alignerβ21Updated 2 years ago
- A repository for the GenGraph toolkit for the creation and manipulation of graph genomesβ51Updated 4 years ago
- Find common blocks and differences between DNA sequencesβ42Updated 2 months ago
- Toolkit for the design and analysis of amplicon sequencing experiments utilizing unique molecular identifiers (UMIs)β42Updated 4 months ago
- BigSeqKit: a parallel Big Data toolkit to process FASTA and FASTQ files at scaleβ56Updated 2 years ago
- A pipeline for preprocessing NGS data from Illumina, Nanopore and PacBio technologiesβ35Updated last year
- pathoscore evaluates variant pathogenicity tools and scores.β22Updated 3 years ago
- β25Updated last year
- Inverted Repeats Finder: a program to analyze DNA and RNA sequencesβ20Updated 10 months ago
- Evolcust retrieves groups of genes that appear clustered together in groups of speciesβ16Updated 3 years ago
- PhyloCSF++ computes PhyloCSF tracks for whole-genome multiple sequence alignments, scores single MSA, annotates CDS features in GFF/GTF fβ¦β31Updated 3 years ago
- Ultra-fast 5' and 3' demultiplexerβ28Updated last year
- Cython bindings and Python interface to trimAl, a tool for automated alignment trimming. Now with SIMD!β27Updated last month
- An Artificial Neural Network-based discriminator for validating clinically significant genomic variantsβ35Updated 2 years ago
- NastyBugs: a simple method for extracting antimicrobial resistance information from metagenomesβ22Updated 7 years ago
- βοΈ Deep learning-based splice site predictor that improves spliced alignmentsβ59Updated 10 months ago
- A Generative Pre-Trained Transformer Package for Pangenomesβ53Updated 8 months ago
- A python tool box for fast and accurate quality control, conversion and alignment of nanopore sequencing dataβ20Updated 3 years ago
- DeepSig - Predictor of signal peptides in proteins based on deep learningβ27Updated 2 years ago
- Deep learning embedding for nucleotide sequencesβ19Updated 9 months ago
- Protein Alignment and Detection Interfaceβ60Updated last year
- A Quality Control filter and parser for NCBI BLAST XML results.β17Updated 5 years ago
- Hclust2 is a handy tool for plotting heat-maps with several useful options to produce high quality figures that can be used in publicatioβ¦β12Updated 3 years ago