broadinstitute / adaptLinks
A package for designing activity-informed nucleic acid diagnostics for viruses.
☆31Updated 2 years ago
Alternatives and similar repositories for adapt
Users that are interested in adapt are comparing it to the libraries listed below
Sorting:
- 🧬 MSABrowser: dynamic and fast visualization of sequence alignments, variations, and annotations☆32Updated last year
- A Generative Pre-Trained Transformer Package for Pangenomes☆51Updated 2 weeks ago
- NastyBugs: a simple method for extracting antimicrobial resistance information from metagenomes☆21Updated 6 years ago
- DeepSig - Predictor of signal peptides in proteins based on deep learning☆26Updated 2 years ago
- Tool package to perform in-silico CRISPR analysis and assessment☆27Updated last year
- Python bindings for the TaxonKit library☆40Updated 3 weeks ago
- Improved Inference of Ortholog Groups using Hidden Markov Models☆34Updated 3 months ago
- Metagenome analysis using the Kraken software suite☆32Updated 2 years ago
- Implementation of Krona to QIIME2☆16Updated last year
- VIRULIGN: fast codon-correct alignment and annotation of viral genomes☆35Updated 4 years ago
- A tool for simulating random mutations in any genome☆38Updated last year
- Bacterial Annotation by Learned Representation of Genes☆55Updated 4 years ago
- A genome browser in your Jupyter notebook☆31Updated 3 weeks ago
- POSTRE: Prediction Of STRuctural variant Effects☆24Updated 3 months ago
- Code and manual of the endoR R-package (Ruaud et al, in preparation).☆12Updated last year
- Hybridization probe design for targeted genomic sequencing of diverse and hypervariable viral taxa☆24Updated 2 years ago
- Ultra rapid nanopore whole genome sequencing pipeline, published in https://www.nature.com/articles/s41587-022-01221-5☆20Updated 11 months ago
- SAMStat displays various properties of next-generation sequencing reads stored in SAM/BAM format.☆24Updated last year
- Deprecated see https://github.com/MHH-RCUG/nf_wochenende : A whole Genome/Metagenome Sequencing Alignment Pipeline in Python3☆36Updated 2 years ago
- Influenza genome analysis Nextflow workflow☆26Updated last month
- Reference-guided multiple sequence alignment of viral genomes☆68Updated 4 months ago
- showTree can visualize the phylogeny, protein sequences and protein domains of a gene family in one figure.☆30Updated 6 years ago
- GSAlign: an ultra-fast sequence alignment algorithm for intra-species genome comparison☆58Updated last year
- MetaLogo: a heterogeneity-aware sequence logo generator and aligner☆20Updated 2 years ago
- Find Unique genomic Regions☆29Updated 2 months ago
- Annotate sequences from BLAST against KEGG DB with KO numbers and summarize them in KEGG modules.☆22Updated 6 years ago
- BigSeqKit: a parallel Big Data toolkit to process FASTA and FASTQ files at scale☆55Updated last year
- Plot multiple sequence alignment (MSA)☆14Updated 8 months ago
- Calculate dN/dS ratio precisely (Ka/Ks) using a codon-by-codon counting method.☆25Updated 7 years ago
- Toolkit for the design and analysis of amplicon sequencing experiments utilizing unique molecular identifiers (UMIs)☆41Updated last year