broadinstitute / adapt
A package for designing activity-informed nucleic acid diagnostics for viruses.
β31Updated 2 years ago
Alternatives and similar repositories for adapt:
Users that are interested in adapt are comparing it to the libraries listed below
- DeepSig - Predictor of signal peptides in proteins based on deep learningβ26Updated last year
- Implementation of Krona to QIIME2β15Updated last year
- 𧬠MSABrowser: dynamic and fast visualization of sequence alignments, variations, and annotationsβ32Updated 10 months ago
- Python bindings for the TaxonKit libraryβ35Updated 2 months ago
- NastyBugs: a simple method for extracting antimicrobial resistance information from metagenomesβ20Updated 6 years ago
- Bacterial Annotation by Learned Representation of Genesβ55Updated 4 years ago
- β31Updated 3 years ago
- Protein Alignment and Detection Interfaceβ61Updated 11 months ago
- BiG-MEx implementation as Docker images and R packagesβ13Updated 3 years ago
- Convert genbank files to a swath of other formatsβ16Updated last year
- β12Updated 4 years ago
- The NanoPipe pipeline analyzes reads generated by the Oxford Nanopore sequencing devices. As a result, it provides alignments to any targβ¦β18Updated 6 years ago
- A Generative Pre-Trained Transformer Package for Pangenomesβ50Updated 10 months ago
- Reference-guided multiple sequence alignment of viral genomesβ65Updated 2 months ago
- Metagenome analysis using the Kraken software suiteβ31Updated 2 years ago
- VIRULIGN: fast codon-correct alignment and annotation of viral genomesβ33Updated 3 years ago
- BigSeqKit: a parallel Big Data toolkit to process FASTA and FASTQ files at scaleβ56Updated last year
- A pipeline for preprocessing NGS data from Illumina, Nanopore and PacBio technologiesβ32Updated 8 months ago
- Deep learning embedding for nucleotide sequencesβ17Updated 2 months ago
- MetaLogo: a heterogeneity-aware sequence logo generator and alignerβ20Updated last year
- β28Updated 4 years ago
- PhyloCSF++ computes PhyloCSF tracks for whole-genome multiple sequence alignments, scores single MSA, annotates CDS features in GFF/GTF fβ¦β31Updated 3 years ago
- Design degenerated primers on highly variable alignments for full genome sequencing or qPCR. Specifically developed for viruses.β36Updated last month
- http://www.combio.pl/alfreeβ23Updated 2 years ago
- Hybridization probe design for targeted genomic sequencing of diverse and hypervariable viral taxaβ23Updated last year
- Tool package to perform in-silico CRISPR analysis and assessmentβ24Updated 10 months ago
- Influenza genome analysis Nextflow workflowβ26Updated 2 months ago
- Reference Phylogeny for Bacterial and Archaeal Genomesβ25Updated 2 years ago
- Inference of putative transmission phylogenetic clustersβ11Updated 4 years ago
- Annotate sequences from BLAST against KEGG DB with KO numbers and summarize them in KEGG modules.β22Updated 6 years ago