A package for designing activity-informed nucleic acid diagnostics for viruses.
☆35Feb 14, 2023Updated 3 years ago
Alternatives and similar repositories for adapt
Users that are interested in adapt are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- finding conserved regions in highly diverse genomes☆16Jun 1, 2025Updated 9 months ago
- Alignment and variant-calling pipeline for Illumina HIV sequences.☆11May 19, 2020Updated 5 years ago
- A package for designing compact and comprehensive capture probe sets.☆94Jan 25, 2024Updated 2 years ago
- ☆12Nov 23, 2020Updated 5 years ago
- Olivar: towards automated variant aware primer design for multiplex tiled amplicon sequencing of pathogens☆38Jan 22, 2026Updated 2 months ago
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- Design degenerated primers on highly variable alignments for full genome sequencing or qPCR. Specifically developed for viruses.☆48Updated this week
- Optimise PCR primer-set grouping for genetics research☆18Feb 24, 2026Updated last month
- Repository containing a method for automatically identifying pathogen lineages from a phylogeny.☆17May 19, 2023Updated 2 years ago
- Quasitools is a collection of tools for analysing viral quasispecies data.☆27Nov 25, 2021Updated 4 years ago
- Influenza genome analysis Nextflow workflow☆31Sep 15, 2025Updated 6 months ago
- Cluster Investigation & Virus Epidemiology Tool☆50Jun 17, 2025Updated 9 months ago
- Shell bootloader for data science.☆12Updated this week
- A placeholder for all my random scripts. Some scripts might eventually graduate and go to their own projects, so don't be surprised if a…☆17Nov 24, 2025Updated 4 months ago
- Computational biology utility scripts☆19Apr 16, 2025Updated 11 months ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click and start building anything your business needs.
- Scripts, HMMs and search databases for identifying and classifying viral RdRp sequences☆11Jul 4, 2025Updated 8 months ago
- The NCBI SARS-CoV-2 Variant Calling (SC2VC) Pipeline allows calling high-confidence variants from SARS-CoV-2 NGS data in a standardized f…☆14Apr 21, 2023Updated 2 years ago
- Database of virus RdRP barcode sequences☆16Jul 5, 2024Updated last year
- Toolkit for the design and analysis of amplicon sequencing experiments utilizing unique molecular identifiers (UMIs)☆42Updated this week
- Pipeline for metagenomic community analysis using DNA isolated from virus-like particles☆13Mar 21, 2020Updated 6 years ago
- CRISPR/Cas-directed HDR genome editing suite: finds+scores gRNA targets, generates donor DNAs, & produces optimal cPCR primer designs.☆13Oct 18, 2021Updated 4 years ago
- ☆11Jun 3, 2025Updated 9 months ago
- Ultrafast sequence typing and gene detection from NGS raw reads☆20Apr 15, 2021Updated 4 years ago
- Archived - please see updated sccmec tool at link below☆13Aug 30, 2024Updated last year
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- ☆20May 14, 2025Updated 10 months ago
- BlastGraph is a new tool for computing intensive approximate pattern matching in a sequence graph or a de-Bruijn graph. Given an oriented…☆12May 9, 2013Updated 12 years ago
- This repository houses the code to run SURPI+, a rapid computational pipeline for comprehensive identification of pathogens from clinical…☆42Nov 20, 2019Updated 6 years ago
- Repository for the paper "The impact of package selection and versioning on single-cell RNA-seq analysis"☆21Nov 27, 2025Updated 3 months ago
- PrimerTree: Visually Assessing the Specificity and Informativeness of Primer Pairs☆52Oct 28, 2025Updated 4 months ago
- Integrating influenza antigenic dynamics with molecular evolution☆12May 28, 2015Updated 10 years ago
- Predict MLST directly from uncorrected long reads☆27Oct 31, 2025Updated 4 months ago
- Prediction of B-cell epitopes from amino acid sequences using deep neural networks.☆16Aug 3, 2021Updated 4 years ago
- programs and scripts, mainly python, for analyses related to nucleic or protein sequences☆24Jan 30, 2026Updated last month
- NordVPN Special Discount Offer • AdSave on top-rated NordVPN 1 or 2-year plans with secure browsing, privacy protection, and support for for all major platforms.
- iFISH Probe Design: a Python3 package to build iFISH probes.☆12Mar 11, 2022Updated 4 years ago
- ☆22Aug 1, 2025Updated 7 months ago
- Bayesian-based fetal genotyping using maternal cell-free DNA and parental sequencing data.☆14Jun 5, 2019Updated 6 years ago
- ☆20May 24, 2025Updated 10 months ago
- a tool for designing primer panels for multiplex PCR.☆107Feb 5, 2024Updated 2 years ago
- A DRAFT, early stage book on snakemake.☆22Nov 1, 2023Updated 2 years ago
- Some simple scripts to ease management and local basecalling of millions of FAST5 files☆25Nov 25, 2017Updated 8 years ago