Learning and Aligning Large Protein Families with support of protein language models.
☆33Sep 26, 2026Updated this week
Alternatives and similar repositories for learnMSA
Users that are interested in learnMSA are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- GeneMark-ETP: gene finding in eukaryotic genomes supported by transcriptome sequencing and protein homology☆32Apr 11, 2025Updated last year
- Tiberius is a deep learning gene finder.☆139Updated this week
- Graph Clustering Merger☆36Mar 25, 2024Updated 2 years ago
- Better Alignments with Translated HMMER☆27Updated this week
- Pathogenfinder2☆19Apr 20, 2026Updated 5 months ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Robust individual and aggregate checksums for nucleotide sequences☆18Mar 3, 2026Updated 6 months ago
- Mabs, a genome assembly tool that optimizes parameters of Hifiasm and Flye☆37Apr 20, 2026Updated 5 months ago
- Cython bindings and Python interface to HMMER3.☆172Aug 19, 2026Updated last month
- A tool for visualising kmers in 2D space.☆14Feb 23, 2025Updated last year
- GALBA is a pipeline for fully automated prediction of protein coding gene structures with AUGUSTUS in novel eukaryotic genomes for the sc…☆149Apr 13, 2026Updated 5 months ago
- This pipeline is used to distinguish allotetraploid subgenomes.☆11Apr 8, 2024Updated 2 years ago
- Fast, accurate construction of multiple sequence alignments from protein language embeddings☆20Jul 22, 2026Updated 2 months ago
- ☆18Oct 7, 2024Updated last year
- Taxon-aware analysis of clustered protein sequences☆31Jul 1, 2024Updated 2 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Iterative error correction of long reads☆13Dec 9, 2022Updated 3 years ago
- Hybrid Error Correction of Long Reads using Iterative Learning☆10Sep 27, 2018Updated 8 years ago
- Detecting multi-genome synteny using minimizer graph mapping☆116Updated this week
- Using Deep Learning to predict gene annotations☆308Jul 22, 2026Updated 2 months ago
- A Rich renderable for viewing Multiple Sequence Alignments in the terminal.☆85May 31, 2022Updated 4 years ago
- ClaMSA (Classify Multiple Sequence Alignments).☆13Nov 21, 2024Updated last year
- VACmap: a long-read aligner specifically designed for complex structural variation discovery☆68May 26, 2026Updated 4 months ago
- Banded Striped DNA Sequence Alignment☆54May 9, 2023Updated 3 years ago
- uorf4u is a bioinformatics tool for conserved upstream ORF annotation.☆16Sep 16, 2025Updated last year
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- A machine learning approach to alignment filtering☆17Jun 18, 2026Updated 3 months ago
- Scripts, HMMs and search databases for identifying and classifying viral RdRp sequences☆16Aug 6, 2026Updated last month
- Cython bindings and Python interface to FastANI, a method for fast whole-genome similarity estimation.☆25Jul 22, 2026Updated 2 months ago
- Perl and Python scripts allowing to get sequence information from GenBank, RefSeq or ENA sequence repositories☆14Mar 29, 2025Updated last year
- BlockPolish: accurate polishing of long-read assembly via block divide-and-conquer☆17Jun 15, 2023Updated 3 years ago
- Virus Identification☆29May 26, 2025Updated last year
- ☆14Dec 26, 2025Updated 9 months ago
- 🚀 LiftOn: Accurate annotation mapping for GFF/GTF across assemblies☆131Updated this week
- Plugin that provides pairing functions to the Polars library☆14Feb 14, 2025Updated last year
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- Nature Biotechnology: Ultra-fast, sensitive detection of protein remote homologs using deep dense retrieval☆126Jun 28, 2026Updated 2 months ago
- Mikado is a lightweight Python3 pipeline whose purpose is to facilitate the identification of expressed loci from RNA-Seq data * and to s…☆115Jan 30, 2026Updated 7 months ago
- Quickly get coverage statistics given reads and an assembly☆17May 13, 2024Updated 2 years ago
- Sequence analysis library used by Eddy/Rivas lab code☆55Sep 4, 2026Updated 3 weeks ago
- ☆45Dec 11, 2025Updated 9 months ago
- PhyloAln: a convenient reference-based tool to align sequences and high-throughput reads for phylogeny and evolution in the omic era☆19Apr 16, 2026Updated 5 months ago
- Repository for codes, analyses and visualizations for the CAMI II challenges☆15Sep 4, 2023Updated 3 years ago