Gaius-Augustus / learnMSALinks
Learning and Aligning Large Protein Families with support of protein language models.
☆27Updated last week
Alternatives and similar repositories for learnMSA
Users that are interested in learnMSA are comparing it to the libraries listed below
Sorting:
- Improved Inference of Ortholog Groups using Hidden Markov Models☆37Updated 3 weeks ago
- Universal and efficient structure-based core gene phylogeny with Foldseek and ProstT5☆75Updated 3 months ago
- A program for divvying or partially filtering multiple sequence alignments☆27Updated 5 years ago
- SHOOT.bio - the phylogenetic search engine☆25Updated 2 years ago
- ☆38Updated 2 years ago
- ☆26Updated 3 months ago
- Bacterial Annotation by Learned Representation of Genes☆58Updated 4 years ago
- a python package for automated generation of phylogenetic trees from genbank files☆23Updated 7 months ago
- genEra is a fast and easy-to-use command-line tool that estimates the age of the last common ancestor of protein-coding gene families.☆52Updated 10 months ago
- Python tool to reduce size and redundancy of phylogenetic datasets☆45Updated 2 years ago
- Detection of incorrectly labeled sequences across kingdoms☆85Updated 2 years ago
- Clustering the NCBI nr database with mmseq2 (90% length, 90% identity). Inspired by the NCBI's experimental ClusteredNR database.☆23Updated 2 years ago
- VirID: An integrated platform for the discovery and characterization of RNA Viruses☆22Updated 7 months ago
- Exploring the "dusk matter" of the RNA virosphere☆35Updated 3 years ago
- Python bindings for the TaxonKit library☆40Updated 3 months ago
- ☆31Updated 9 months ago
- Influenza genome analysis Nextflow workflow☆28Updated 3 weeks ago
- MacSyFinder - Detection of macromolecular systems in protein datasets using systems modelling and similarity search.☆64Updated this week
- Simple phylogenetic tree visualization python package for phylogenetic analysis☆55Updated last year
- UFCG: Universal Fungal Core Genes☆34Updated 2 months ago
- ☆16Updated 3 months ago
- A Python package for obtaining complete lineages and the lowest common ancestor (LCA) from a set of taxonomic identifiers☆50Updated 8 months ago
- Evaluating Nanopore-based bacterial variant calling☆19Updated 2 months ago
- VirBot: a protein-based RNA virus detector for metagenomic data☆34Updated last year
- A pipeline for high-quality bacterial genome construction using ONT sequencing☆39Updated 3 years ago
- Tiberius is a deep learning gene finder.☆77Updated this week
- Fast and accurate tool for calculating Average Nucleotide Identity (ANI) and clustering virus genomes and metagenomes☆89Updated 4 months ago
- Design degenerated primers on highly variable alignments for full genome sequencing or qPCR. Specifically developed for viruses.☆41Updated last month
- ☆27Updated 5 years ago
- ☆17Updated 3 years ago