Learning and Aligning Large Protein Families with support of protein language models.
☆31Mar 27, 2026Updated this week
Alternatives and similar repositories for learnMSA
Users that are interested in learnMSA are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- GeneMark-ETP: gene finding in eukaryotic genomes supported by transcriptome sequencing and protein homology☆28Apr 11, 2025Updated 11 months ago
- Tiberius is a deep learning gene finder.☆101Mar 12, 2026Updated 2 weeks ago
- Better Alignments with Translated HMMER☆25Mar 10, 2026Updated 2 weeks ago
- Graph Clustering Merger☆36Mar 25, 2024Updated 2 years ago
- A tool for visualising kmers in 2D space.☆12Feb 23, 2025Updated last year
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Mabs, a genome assembly tool that optimizes parameters of Hifiasm and Flye☆35Mar 5, 2026Updated 3 weeks ago
- Cython bindings and Python interface to HMMER3.☆160Mar 17, 2026Updated last week
- A pipeline for genomic variant detection with genome assemblies at population scale☆39Jun 3, 2025Updated 9 months ago
- GALBA is a pipeline for fully automated prediction of protein coding gene structures with AUGUSTUS in novel eukaryotic genomes for the sc…☆148Jan 27, 2025Updated last year
- This pipeline is used to distinguish allotetraploid subgenomes.☆11Apr 8, 2024Updated last year
- ☆17Oct 7, 2024Updated last year
- Iterative error correction of long reads☆13Dec 9, 2022Updated 3 years ago
- ☆16Jun 9, 2025Updated 9 months ago
- Taxon-aware analysis of clustered protein sequences☆31Jul 1, 2024Updated last year
- NordVPN Threat Protection Pro™ • AdTake your cybersecurity to the next level. Block phishing, malware, trackers, and ads. Lightweight app that works with all browsers.
- Detecting multi-genome synteny using minimizer graph mapping☆104Mar 18, 2026Updated last week
- HAlign 4: A New Strategy for Rapidly Aligning Millions of Sequences☆17Mar 13, 2026Updated 2 weeks ago
- ☆45Dec 11, 2025Updated 3 months ago
- Robust individual and aggregate checksums for nucleotide sequences☆17Mar 3, 2026Updated 3 weeks ago
- A Rich renderable for viewing Multiple Sequence Alignments in the terminal.☆85May 31, 2022Updated 3 years ago
- ClaMSA (Classify Multiple Sequence Alignments).☆13Nov 21, 2024Updated last year
- Computational Analysis of Gene Expression Evolution☆45Aug 19, 2025Updated 7 months ago
- Perl and Python scripts allowing to get sequence information from GenBank, RefSeq or ENA sequence repositories☆14Mar 29, 2025Updated 11 months ago
- Quickly get coverage statistics given reads and an assembly☆16May 13, 2024Updated last year
- Wordpress hosting with auto-scaling on Cloudways • AdFully Managed hosting built for WordPress-powered businesses that need reliable, auto-scalable hosting. Cloudways SafeUpdates now available.
- Provide RNA and DNA Foundation Model Benchmarks and Applications☆26Nov 26, 2025Updated 4 months ago
- Taxonomic classifier for sequencing reads (bulk and single-cell data, short and long read) using FM-index with run-block compressed BWT.☆88Updated this week
- Scripts, HMMs and search databases for identifying and classifying viral RdRp sequences☆11Jul 4, 2025Updated 8 months ago
- Banded Striped DNA Sequence Alignment☆52May 9, 2023Updated 2 years ago
- Virus Identification☆25May 26, 2025Updated 10 months ago
- uorf4u is a bioinformatics tool for conserved upstream ORF annotation.☆14Sep 16, 2025Updated 6 months ago
- Hybrid Error Correction of Long Reads using Iterative Learning☆10Sep 27, 2018Updated 7 years ago
- Cython bindings and Python interface to FastANI, a method for fast whole-genome similarity estimation.☆24Mar 7, 2026Updated 3 weeks ago
- Genomic Pre-trained Network☆331Mar 21, 2026Updated last week
- DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- ☆13Dec 26, 2025Updated 3 months ago
- 🚀 LiftOn: Accurate annotation mapping for GFF/GTF across assemblies☆123Feb 24, 2026Updated last month
- This is the standalone version of the EviAnn pipeline☆143Mar 13, 2026Updated 2 weeks ago
- Mikado is a lightweight Python3 pipeline whose purpose is to facilitate the identification of expressed loci from RNA-Seq data * and to s…☆109Jan 30, 2026Updated last month
- PhyloAln: a convenient reference-based tool to align sequences and high-throughput reads for phylogeny and evolution in the omic era☆18Mar 19, 2026Updated last week
- Plugin that provides pairing functions to the Polars library☆14Feb 14, 2025Updated last year
- Nature Biotechnology: Ultra-fast, sensitive detection of protein remote homologs using deep dense retrieval☆122Aug 30, 2024Updated last year