Align multiple amino acid or nucleotide sequences.
☆75Sep 17, 2020Updated 5 years ago
Alternatives and similar repositories for mafft
Users that are interested in mafft are comparing it to the libraries listed below
Sorting:
- ☆15Aug 22, 2023Updated 2 years ago
- Multiple sequence and structure alignment with top benchmark scores scalable to thousands of sequences. Generates replicate alignments, e…☆269Feb 23, 2026Updated last week
- the we-flyin WFA-guided ultralong tiling sequence aligner☆10May 13, 2021Updated 4 years ago
- Non-parametric structural variant genotyper☆15Nov 18, 2021Updated 4 years ago
- The Subread software package is a tool kit for processing next-gen sequencing data. It includes Subread aligner, Subjunc exon-exon juncti…☆55Jul 30, 2023Updated 2 years ago
- a toolset for efficient analysis of 10X Genomics linked read data sets, in particular for de novo assembly☆15Nov 27, 2019Updated 6 years ago
- Multiple sequence aligner for protein and DNA/RNA.☆22Jan 3, 2018Updated 8 years ago
- CGView is a Java package for generating high-quality, zoomable maps of circular genomes.☆51Updated this week
- Fast and accurately polish the genome generated by long reads.☆240Jan 9, 2025Updated last year
- A whole-genome and alignment-free prokaryotic phylogeny tool☆23Mar 9, 2025Updated 11 months ago
- a toolset for fast DNA read set matching and assembly using a new type of reduced kmer☆37Aug 4, 2021Updated 4 years ago
- Population-scale detection of non-reference sequence variants using colored de Bruijn Graphs☆26Apr 29, 2024Updated last year
- rhierbaps: R implementation of hierBAPS☆37Feb 23, 2026Updated last week
- Tool for decomposition centromeric assemblies and long reads into monomers☆37Sep 17, 2022Updated 3 years ago
- Translocator: local realignment and global remapping enabling accurate translocation detection using single-molecule sequencing long read…☆12Jan 22, 2020Updated 6 years ago
- MUMmer3☆17Jan 12, 2022Updated 4 years ago
- De-Novo Repeat Discovery Tool☆231Jul 21, 2025Updated 7 months ago
- A fork of exonerate: a generic tool for sequence alignment☆71Nov 30, 2023Updated 2 years ago
- Header-only, gzread-like reader for gzip, bz2, and xz.☆11Aug 8, 2018Updated 7 years ago
- ☆11Dec 9, 2022Updated 3 years ago
- RepeatMasker is a program that screens DNA sequences for interspersed repeats and low complexity DNA sequences.☆293Dec 17, 2025Updated 2 months ago
- GBWT-based handle graph☆31Feb 11, 2026Updated 3 weeks ago
- A tool for automated alignment trimming in large-scale phylogenetic analyses. Development version: 2.0☆249Updated this week
- A fast multiple sequence alignment program.☆154Feb 11, 2026Updated 3 weeks ago
- a hidden Markov model to infer simple repeats from genome sequences☆37Feb 19, 2021Updated 5 years ago
- Get assembly statistics from FASTA and FASTQ files☆124May 9, 2023Updated 2 years ago
- Simple script to generate whole-genome coverage plots☆19Jun 23, 2015Updated 10 years ago
- Hidden Markov Model based Copy number caller☆20Dec 9, 2025Updated 2 months ago
- Identify and find telomeres, or telomeric repeats in a genome.☆158Nov 24, 2025Updated 3 months ago
- A simple and fast metassembler and assembly gap filler designed for long molecule based assemblies.☆207Nov 18, 2022Updated 3 years ago
- Importing vg json graphs to Python data structures.☆12Nov 11, 2020Updated 5 years ago
- CNV calling algorithm for detection of homozygous and hemizygous deletions from whole exome sequencing data☆12Nov 9, 2025Updated 3 months ago
- The Modular Aligner and The Modular SV Caller☆46Jul 18, 2023Updated 2 years ago
- PAML is a package of programs for phylogenetic analyses of DNA or protein sequences using maximum likelihood. Please report only **techni…☆184Jan 29, 2026Updated last month
- Pipeline for the identification of (coding) gene structures in draft genomes.☆36May 9, 2024Updated last year
- Close assembly gaps using long-reads at high accuracy.☆50Feb 20, 2024Updated 2 years ago
- ☆23Feb 16, 2026Updated 2 weeks ago
- High-level API for storing and querying sequence variant data☆20May 24, 2019Updated 6 years ago
- ☆347Mar 4, 2025Updated last year