Align multiple amino acid or nucleotide sequences.
☆87Sep 17, 2020Updated 5 years ago
Alternatives and similar repositories for mafft
Users that are interested in mafft are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Multiple sequence aligner for protein and DNA/RNA.☆26Jan 3, 2018Updated 8 years ago
- Multiple sequence and structure alignment with top benchmark scores scalable to thousands of sequences. Generates replicate alignments, e…☆282Apr 20, 2026Updated last month
- The Subread software package is a tool kit for processing next-gen sequencing data. It includes Subread aligner, Subjunc exon-exon juncti…☆57Jul 30, 2023Updated 2 years ago
- Fast and accurately polish the genome generated by long reads.☆243Jan 9, 2025Updated last year
- ☆15Aug 22, 2023Updated 2 years ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- CGView is a Java package for generating high-quality, zoomable maps of circular genomes.☆55Mar 2, 2026Updated 3 months ago
- A fork of exonerate: a generic tool for sequence alignment☆72Nov 30, 2023Updated 2 years ago
- Non-parametric structural variant genotyper☆15Nov 18, 2021Updated 4 years ago
- LTR_retriever is a highly accurate and sensitive program for identification of LTR retrotransposons; The LTR Assembly Index (LAI) is also…☆216May 12, 2026Updated last month
- ☆41Oct 6, 2025Updated 8 months ago
- A whole-genome and alignment-free prokaryotic phylogeny tool☆23May 26, 2026Updated 3 weeks ago
- A tool for automated alignment trimming in large-scale phylogenetic analyses. Development version: 2.0☆262Updated this week
- RepeatMasker is a program that screens DNA sequences for interspersed repeats and low complexity DNA sequences.☆306Jun 4, 2026Updated last week
- PAML is a package of programs for phylogenetic analyses of DNA or protein sequences using maximum likelihood. Please report only **techni…☆198Jan 29, 2026Updated 4 months ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- the we-flyin WFA-guided ultralong tiling sequence aligner☆10May 13, 2021Updated 5 years ago
- rhierbaps: R implementation of hierBAPS☆36Feb 23, 2026Updated 3 months ago
- a toolset for efficient analysis of 10X Genomics linked read data sets, in particular for de novo assembly☆15Nov 27, 2019Updated 6 years ago
- a hidden Markov model to infer simple repeats from genome sequences☆37Feb 19, 2021Updated 5 years ago
- MUMmer3☆17Jan 12, 2022Updated 4 years ago
- De-Novo Repeat Discovery Tool☆240Jun 8, 2026Updated last week
- Tool for decomposition centromeric assemblies and long reads into monomers☆37Sep 17, 2022Updated 3 years ago
- Nanopanel2: a somatic variant caller for Nanopore panel sequencing data☆11Sep 21, 2021Updated 4 years ago
- RAxML Next Generation: faster, easier-to-use and more flexible☆466Jun 8, 2026Updated last week
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Translocator: local realignment and global remapping enabling accurate translocation detection using single-molecule sequencing long read…☆12Jan 22, 2020Updated 6 years ago
- A genomic k-mer counter (and sequence utility) with nice features.☆168Jun 3, 2026Updated last week
- Mummer alignment tool☆561Feb 4, 2025Updated last year
- Population-scale detection of non-reference sequence variants using colored de Bruijn Graphs☆26Apr 29, 2024Updated 2 years ago
- ☆348Mar 4, 2025Updated last year
- IQ-TREE software version 2: phylogenetics by maximum likelihood☆332Mar 12, 2026Updated 3 months ago
- Identify and find telomeres, or telomeric repeats in a genome.☆165Nov 24, 2025Updated 6 months ago
- A parallel wrapper for LTR_FINDER☆55Mar 8, 2026Updated 3 months ago
- Get assembly statistics from FASTA and FASTQ files☆124May 9, 2023Updated 3 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Version 5 of the CAFE phylogenetics software☆171Mar 16, 2026Updated 3 months ago
- A program for detection of tRNA genes☆89Nov 16, 2022Updated 3 years ago
- Close assembly gaps using long-reads at high accuracy.☆51Feb 20, 2024Updated 2 years ago
- Graph Learning of INTER-protein contacts☆10Feb 20, 2022Updated 4 years ago
- Repeat-aware polishing genomes assembled using HiFi long reads☆103Apr 7, 2026Updated 2 months ago
- a toolset for fast DNA read set matching and assembly using a new type of reduced kmer☆37Aug 4, 2021Updated 4 years ago
- HMMER: biological sequence analysis using profile HMMs☆414May 30, 2026Updated 2 weeks ago