Alternatives and similar repositories for kalign

Users that are interested in kalign are comparing it to the libraries listed below

• refresh-bio / FAMSA
  Algorithm for ultra-scale multiple sequence alignments (3M protein sequences in 5 minutes and 24 GB of RAM)
  ☆158Updated 10 months ago
• EddyRivasLab / infernal
  RNA secondary structure/sequence profiles for homology search and alignment
  ☆112Updated 8 months ago
• soedinglab / plass
  sensitive and precise assembly of short sequencing reads
  ☆157Updated 9 months ago
• moshi4 / pyMSAviz
  MSA(Multiple Sequence Alignment) visualization python package for sequence analysis
  ☆136Updated 7 months ago
• althonos / rich-msa
  A Rich renderable for viewing Multiple Sequence Alignments in the terminal.
  ☆85Updated 3 years ago
• Lattice-Automation / seqfold
  nucleic acid folding
  ☆94Updated 11 months ago
• Benjamin-Lee / CodonAdaptationIndex
  Python Implementation of Codon Adaption Index
  ☆37Updated 2 years ago
• rcedgar / reseek
  Protein structure alignment and search algorithm
  ☆63Updated last week
• althonos / pyhmmer
  Cython bindings and Python interface to HMMER3.
  ☆141Updated 3 weeks ago
• iquasere / UPIMAPI
  UniProt Id Mapping through API
  ☆34Updated 9 months ago
• althonos / pyfamsa
  Cython bindings and Python interface to FAMSA, an algorithm for ultra-scale multiple sequence alignments.
  ☆32Updated last month
• cbcrg / tcoffee
  A collection of tools for Multiple Alignments of DNA, RNA, Protein Sequence
  ☆106Updated 5 months ago
• IndexThePlanet / Logan
  Logan Unitigs and Contigs
  ☆137Updated this week
• arvestad / alv
  A console-based alignment viewer
  ☆114Updated last month
• ViennaRNA / forgi
  An RNA manipulation library.
  ☆56Updated last year
• mmcguffi / pLannotate
  Webserver and command line tool for annotating engineered plasmids
  ☆123Updated this week
• jeffdaily / parasail-python
  Python bindings for the parasail C library.
  ☆102Updated 10 months ago
• Russel88 / CRISPRCasTyper
  CCTyper: Automatic detection and subtyping of CRISPR-Cas operons
  ☆102Updated last year
• Merck / deepbgc
  BGC Detection and Classification Using Deep Learning
  ☆148Updated last year
• KatyBrown / CIAlign
  ☆131Updated 10 months ago
• nf-core / proteinfold
  Protein 3D structure prediction pipeline
  ☆82Updated last week
• guyleonard / get_jgi_genomes
  A quick and easy way to download the genomes/predicted proteins of taxa available in JGI's Genome Portal.
  ☆37Updated last month
• dincarnato / RNAFramework
  RNA structure probing and post-transcriptional modifications mapping high-throughput data analysis
  ☆40Updated 2 weeks ago
• fteufel / signalp-6.0
  Multi-class signal peptide prediction and structure decoding model.
  ☆89Updated 5 months ago
• steineggerlab / Metabuli
  Metabuli: specific and sensitive metagenomic classification via joint analysis of DNA and amino acid.
  ☆141Updated last week
• UCLOrengoGroup / cath-tools
  Protein structure comparison tools such as SSAP and SNAP
  ☆64Updated last year
• r2dt-bio / R2DT
  Visualise RNA secondary structure in consistent, reproducible and recognisable layouts
  ☆74Updated last month
• medema-group / bigslice
  A highly scalable, user-interactive tool for the large scale analysis of Biosynthetic Gene Clusters data
  ☆82Updated 7 months ago
• Edinburgh-Genome-Foundry / python_codon_tables
  Codon usage tables in code-friendly format + Python bindings
  ☆37Updated 2 months ago
• SysBioChalmers / GECKO
  Toolbox for including enzyme constraints on a genome-scale model.
  ☆76Updated 2 months ago