A fast multiple sequence alignment program.
☆162Jul 22, 2026Updated last month
Alternatives and similar repositories for kalign
Users that are interested in kalign are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- URMAP ultra-fast read mapper☆38Jun 15, 2020Updated 6 years ago
- Population-scale detection of non-reference sequence variants using colored de Bruijn Graphs☆27Apr 29, 2024Updated 2 years ago
- Efficient C functions to compute the summary statistics (flagstats) for sequencing read sets.☆15Aug 1, 2026Updated 3 weeks ago
- ♥ Fast and Accurate Estimation of Evolutionary Distances☆29Apr 14, 2025Updated last year
- Reference-guided multiple sequence alignment of viral genomes☆73May 30, 2026Updated 3 months ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- Algorithm for ultra-scale multiple sequence alignments (3M protein sequences in 5 minutes and 24 GB of RAM)☆270Jul 20, 2026Updated last month
- Aligns short reads using dynamic seed size with strobemers☆203Updated this week
- Multiple sequence and structure alignment with top benchmark scores scalable to thousands of sequences. Generates replicate alignments, e…☆289Updated this week
- ☆24Apr 2, 2021Updated 5 years ago
- A collection of tools for Multiple Alignments of DNA, RNA, Protein Sequence☆117Jul 21, 2026Updated last month
- alignment to variation graph inducer☆165Jul 29, 2026Updated last month
- ✏️ Genome assembly polishing & SNV detection☆74Jun 12, 2026Updated 2 months ago
- ProphAsm – a rapid computation of simplitigs directly from k-mer sets☆25Feb 17, 2023Updated 3 years ago
- minimizer-space de Bruijn graphs (mdBG) for whole genome assembly☆184Sep 19, 2024Updated last year
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- ULTRA Locates Tandemly Repetitive Areas☆40Oct 23, 2025Updated 10 months ago
- Long read aligner☆115May 26, 2023Updated 3 years ago
- ☆13Jan 23, 2020Updated 6 years ago
- C++ library for analysing and storing large-scale cohorts of sequence variant data☆17Aug 27, 2019Updated 7 years ago
- Simple pileup-based variant caller☆96Apr 25, 2025Updated last year
- a toolset for fast DNA read set matching and assembly using a new type of reduced kmer☆36Aug 4, 2021Updated 5 years ago
- Pangenome graphs (review article on graph-based pangenomic methods)☆73Apr 15, 2020Updated 6 years ago
- Pairwise whole genome aligner☆244Jul 29, 2026Updated last month
- Graph-based mapping of long sequences, noisy or HiFi.☆55Oct 5, 2020Updated 5 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Genome inference from a population reference graph☆96Apr 1, 2025Updated last year
- A fast, AVX2 and ARM Neon accelerated FM index library☆35Dec 9, 2024Updated last year
- Exact Tandem Repeat Finder (not a TRF replacement)☆51Oct 22, 2019Updated 6 years ago
- GBWT-based handle graph☆35Aug 19, 2026Updated last week
- kaamer - protein identification based on amino acid kmers☆11Mar 7, 2023Updated 3 years ago
- Parallel Sequence to Graph Alignment☆35Nov 26, 2022Updated 3 years ago
- VariantStore: A Large-Scale Genomic Variant Search Index☆40Jul 9, 2021Updated 5 years ago
- abPOA: an SIMD-based C library for fast partial order alignment using adaptive band☆146Jun 26, 2026Updated 2 months ago
- a toolset for efficient analysis of 10X Genomics linked read data sets, in particular for de novo assembly☆15Nov 27, 2019Updated 6 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- SIMD partial order alignment tool/library☆183Sep 21, 2025Updated 11 months ago
- ☆15Dec 8, 2022Updated 3 years ago
- Layout module for raw de novo genome assembly of long uncorrected reads.☆21Feb 2, 2021Updated 5 years ago
- Error correction of long reads☆16Jan 30, 2026Updated 7 months ago
- Ultrafast consensus module for raw de novo genome assembly of long uncorrected reads☆242Dec 29, 2023Updated 2 years ago
- ☆14Jan 31, 2020Updated 6 years ago
- AStarix: Fast and Optimal Sequence-to-Graph Aligner☆74Dec 25, 2021Updated 4 years ago